miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16352 3' -62.4 NC_004084.1 + 1568 0.99 0.001745
Target:  5'- cCGGaGCCCGCGAACGGGUCCAGGACGa -3'
miRNA:   3'- -GCCgCGGGCGCUUGCCCAGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 2839 0.73 0.151829
Target:  5'- uCGGCGUCCGCGGugGa-UCgCAGGACa -3'
miRNA:   3'- -GCCGCGGGCGCUugCccAG-GUCCUGc -5'
16352 3' -62.4 NC_004084.1 + 6154 0.69 0.282608
Target:  5'- cCGGgGUUCcugGCGAuCGGGcUCCAGGugGa -3'
miRNA:   3'- -GCCgCGGG---CGCUuGCCC-AGGUCCugC- -5'
16352 3' -62.4 NC_004084.1 + 6754 0.66 0.38858
Target:  5'- aCGGCGuaaguCCCGCGGAagggcagucCGaGGUCUcggcgGGGACGu -3'
miRNA:   3'- -GCCGC-----GGGCGCUU---------GC-CCAGG-----UCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 7239 0.68 0.324999
Target:  5'- aGGauuUCCuCGAcUGGGUCCAGGACGa -3'
miRNA:   3'- gCCgc-GGGcGCUuGCCCAGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 7522 0.66 0.405701
Target:  5'- -uGCGCCCGag--UGGGugcagccgaUCCAGGACGg -3'
miRNA:   3'- gcCGCGGGCgcuuGCCC---------AGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 7604 1.08 0.000307
Target:  5'- cCGGCGCCCGCGAACGGGUCCAGGACGa -3'
miRNA:   3'- -GCCGCGGGCGCUUGCCCAGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 8197 0.66 0.432253
Target:  5'- uGGgGUUCGCGGAUGGcGUCgAGGuuGa -3'
miRNA:   3'- gCCgCGGGCGCUUGCC-CAGgUCCugC- -5'
16352 3' -62.4 NC_004084.1 + 9134 0.7 0.21645
Target:  5'- uCGGCGUCCGuCGGGCGGaaGUCgAGGGg- -3'
miRNA:   3'- -GCCGCGGGC-GCUUGCC--CAGgUCCUgc -5'
16352 3' -62.4 NC_004084.1 + 10451 0.73 0.151829
Target:  5'- cCGGaaGCCCGCGAgGCGa-UCCAGGACGg -3'
miRNA:   3'- -GCCg-CGGGCGCU-UGCccAGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 14031 0.66 0.405701
Target:  5'- -cGCGCUCGUGGAcauCGGuGUUCAGGAgGu -3'
miRNA:   3'- gcCGCGGGCGCUU---GCC-CAGGUCCUgC- -5'
16352 3' -62.4 NC_004084.1 + 14648 0.66 0.383537
Target:  5'- cCGGCgagcgcccagucgauGCCCGCGAGCGucccGG-CCGGGuccuCGa -3'
miRNA:   3'- -GCCG---------------CGGGCGCUUGC----CCaGGUCCu---GC- -5'
16352 3' -62.4 NC_004084.1 + 16011 0.67 0.371121
Target:  5'- uCGGCcaccuccGCCCGUGAcugcGCGGGccUCCucgAGGAUGc -3'
miRNA:   3'- -GCCG-------CGGGCGCU----UGCCC--AGG---UCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 16949 0.66 0.380199
Target:  5'- gGGCG-UCGCGAcguCGGGUCUucgagcgccuGGACGa -3'
miRNA:   3'- gCCGCgGGCGCUu--GCCCAGGu---------CCUGC- -5'
16352 3' -62.4 NC_004084.1 + 18130 0.67 0.355792
Target:  5'- cCGGCucgGCCCG-GAugGaGUCCGGGuCGa -3'
miRNA:   3'- -GCCG---CGGGCgCUugCcCAGGUCCuGC- -5'
16352 3' -62.4 NC_004084.1 + 18964 0.66 0.405701
Target:  5'- uCGGCGCUCGCGccagucggccGGCGGGgaagucguaggUCCcgcuggcgGGGugGg -3'
miRNA:   3'- -GCCGCGGGCGC----------UUGCCC-----------AGG--------UCCugC- -5'
16352 3' -62.4 NC_004084.1 + 22461 0.75 0.110646
Target:  5'- gGGCGCUCGCGAcggcugcguggugGCGGcuccaGUUCGGGACGu -3'
miRNA:   3'- gCCGCGGGCGCU-------------UGCC-----CAGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 27545 0.67 0.363804
Target:  5'- cCGGUGgCCGCGcACaaGGGccUCCcGGACGg -3'
miRNA:   3'- -GCCGCgGGCGCuUG--CCC--AGGuCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 27831 0.7 0.238829
Target:  5'- gCGGCGUCCGCGA---GGUCaC-GGACGa -3'
miRNA:   3'- -GCCGCGGGCGCUugcCCAG-GuCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 29436 0.71 0.205949
Target:  5'- aCGGCGagcuucaCCGCGAACGcGG-CguGGGCGc -3'
miRNA:   3'- -GCCGCg------GGCGCUUGC-CCaGguCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.