miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16352 3' -62.4 NC_004084.1 + 27831 0.7 0.238829
Target:  5'- gCGGCGUCCGCGA---GGUCaC-GGACGa -3'
miRNA:   3'- -GCCGCGGGCGCUugcCCAG-GuCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 47907 0.69 0.282608
Target:  5'- aCGGuCGCuCCGCGAggugccGCGcGaUCCAGGGCa -3'
miRNA:   3'- -GCC-GCG-GGCGCU------UGC-CcAGGUCCUGc -5'
16352 3' -62.4 NC_004084.1 + 7239 0.68 0.324999
Target:  5'- aGGauuUCCuCGAcUGGGUCCAGGACGa -3'
miRNA:   3'- gCCgc-GGGcGCUuGCCCAGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 51937 0.67 0.332508
Target:  5'- aCGuuCGCUCaGcCGGGCGaGGUCCAGGACa -3'
miRNA:   3'- -GCc-GCGGG-C-GCUUGC-CCAGGUCCUGc -5'
16352 3' -62.4 NC_004084.1 + 27545 0.67 0.363804
Target:  5'- cCGGUGgCCGCGcACaaGGGccUCCcGGACGg -3'
miRNA:   3'- -GCCGCgGGCGCuUG--CCC--AGGuCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 41616 0.66 0.380199
Target:  5'- aGGaCGaaCGCGAgGCGacGGUCCGGGACa -3'
miRNA:   3'- gCC-GCggGCGCU-UGC--CCAGGUCCUGc -5'
16352 3' -62.4 NC_004084.1 + 6754 0.66 0.38858
Target:  5'- aCGGCGuaaguCCCGCGGAagggcagucCGaGGUCUcggcgGGGACGu -3'
miRNA:   3'- -GCCGC-----GGGCGCUU---------GC-CCAGG-----UCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 7522 0.66 0.405701
Target:  5'- -uGCGCCCGag--UGGGugcagccgaUCCAGGACGg -3'
miRNA:   3'- gcCGCGGGCgcuuGCCC---------AGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 47366 0.66 0.405701
Target:  5'- gCGGCcgccccuucGUCCGCGucgucGACGGcGagcUCCAGGGCGc -3'
miRNA:   3'- -GCCG---------CGGGCGC-----UUGCC-C---AGGUCCUGC- -5'
16352 3' -62.4 NC_004084.1 + 43782 0.74 0.123272
Target:  5'- gGGCGCUCGCcGGCGGagaGUCCGGcGGCGa -3'
miRNA:   3'- gCCGCGGGCGcUUGCC---CAGGUC-CUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.