miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16353 3' -56.2 NC_004084.1 + 44660 0.76 0.180848
Target:  5'- cCGCCCAGcGCGacCUCgaGGGCGAGCc -3'
miRNA:   3'- aGCGGGUU-CGCauGAGgaUCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 46949 0.79 0.113522
Target:  5'- gUGCCCGAGCGgcUGCUUCgaacucgAGGUGAGCg -3'
miRNA:   3'- aGCGGGUUCGC--AUGAGGa------UCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 47377 0.66 0.660865
Target:  5'- uUCGUCCGcgucgucgacGGCGaGCUCCaGGGCGcgacgacgaAGCc -3'
miRNA:   3'- -AGCGGGU----------UCGCaUGAGGaUCCGC---------UCG- -5'
16353 3' -56.2 NC_004084.1 + 49332 0.66 0.660865
Target:  5'- aUCGCCCGgucGGCGUA--CCgcGGCGAu- -3'
miRNA:   3'- -AGCGGGU---UCGCAUgaGGauCCGCUcg -5'
16353 3' -56.2 NC_004084.1 + 51058 0.66 0.704042
Target:  5'- cCGUCgGAGCGaaccgcgcCUCCUGGGacgacCGGGCg -3'
miRNA:   3'- aGCGGgUUCGCau------GAGGAUCC-----GCUCG- -5'
16353 3' -56.2 NC_004084.1 + 51123 0.7 0.411838
Target:  5'- cUCGUCCAGGaGUACgCUUGGGCGAu- -3'
miRNA:   3'- -AGCGGGUUCgCAUGaGGAUCCGCUcg -5'
16353 3' -56.2 NC_004084.1 + 52623 0.67 0.606372
Target:  5'- aCGCCC-GGCGUcggAUaCCaGGGUGAGUg -3'
miRNA:   3'- aGCGGGuUCGCA---UGaGGaUCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 54022 0.69 0.52071
Target:  5'- cUCGCCgAAGuCGUGCUgCUUGGGCuGGa -3'
miRNA:   3'- -AGCGGgUUC-GCAUGA-GGAUCCGcUCg -5'
16353 3' -56.2 NC_004084.1 + 54546 0.67 0.639077
Target:  5'- aUCGUCCGGcGCuGUAUcaCCgaGGGCGAGCu -3'
miRNA:   3'- -AGCGGGUU-CG-CAUGa-GGa-UCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 54749 0.71 0.375865
Target:  5'- -aGCCCGgugGGCGUGCcaucggUCUGGGUGAGg -3'
miRNA:   3'- agCGGGU---UCGCAUGa-----GGAUCCGCUCg -5'
16353 3' -56.2 NC_004084.1 + 55991 0.66 0.671725
Target:  5'- aUCGCCgauGGCGaGCaUCgCU-GGCGAGCc -3'
miRNA:   3'- -AGCGGgu-UCGCaUG-AG-GAuCCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.