miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16353 3' -56.2 NC_004084.1 + 30659 0.7 0.449866
Target:  5'- aCGCUgUGAGCGgagUACUCCU-GGUGGGCg -3'
miRNA:   3'- aGCGG-GUUCGC---AUGAGGAuCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 54022 0.69 0.52071
Target:  5'- cUCGCCgAAGuCGUGCUgCUUGGGCuGGa -3'
miRNA:   3'- -AGCGGgUUC-GCAUGA-GGAUCCGcUCg -5'
16353 3' -56.2 NC_004084.1 + 29395 0.68 0.531203
Target:  5'- aCGgUCGGGCGgccACUCCUgGGGCGucGCg -3'
miRNA:   3'- aGCgGGUUCGCa--UGAGGA-UCCGCu-CG- -5'
16353 3' -56.2 NC_004084.1 + 13757 0.68 0.541771
Target:  5'- cUCGCCCucGAG-GUcGCg-CUGGGCGGGCu -3'
miRNA:   3'- -AGCGGG--UUCgCA-UGagGAUCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 37559 0.68 0.552408
Target:  5'- aUCGCCgGcGCGgucgACgugccacCCUcGGCGAGCg -3'
miRNA:   3'- -AGCGGgUuCGCa---UGa------GGAuCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 29151 0.67 0.595502
Target:  5'- gCGCugCCGGGCGUACaaCCUGGuuCGAGCc -3'
miRNA:   3'- aGCG--GGUUCGCAUGa-GGAUCc-GCUCG- -5'
16353 3' -56.2 NC_004084.1 + 15885 0.67 0.606372
Target:  5'- gUCGaUCCGAGCGgcUUCCcgcaGCGGGCg -3'
miRNA:   3'- -AGC-GGGUUCGCauGAGGauc-CGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 26150 0.66 0.64889
Target:  5'- aCGCCCAGGU-------UGGGCGGGCa -3'
miRNA:   3'- aGCGGGUUCGcaugaggAUCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 13103 0.66 0.660865
Target:  5'- gUCGUgCCGGGCGUAgUcgaCCUGGaguuGCGGGCc -3'
miRNA:   3'- -AGCG-GGUUCGCAUgA---GGAUC----CGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 13918 0.66 0.693324
Target:  5'- cCGCUUc-GCGgaACUCCUcgucaucguuuAGGCGAGCc -3'
miRNA:   3'- aGCGGGuuCGCa-UGAGGA-----------UCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 7293 0.99 0.004607
Target:  5'- aUCGCCCAAGCGUACUCCUGGaCGAGCu -3'
miRNA:   3'- -AGCGGGUUCGCAUGAGGAUCcGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.