miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16353 3' -56.2 NC_004084.1 + 7293 0.99 0.004607
Target:  5'- aUCGCCCAAGCGUACUCCUGGaCGAGCu -3'
miRNA:   3'- -AGCGGGUUCGCAUGAGGAUCcGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 46949 0.79 0.113522
Target:  5'- gUGCCCGAGCGgcUGCUUCgaacucgAGGUGAGCg -3'
miRNA:   3'- aGCGGGUUCGC--AUGAGGa------UCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 44660 0.76 0.180848
Target:  5'- cCGCCCAGcGCGacCUCgaGGGCGAGCc -3'
miRNA:   3'- aGCGGGUU-CGCauGAGgaUCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 35110 0.72 0.342076
Target:  5'- aCGCCUcAGCGUACaguucuugucgaUCCUGGGCGucgaGGUc -3'
miRNA:   3'- aGCGGGuUCGCAUG------------AGGAUCCGC----UCG- -5'
16353 3' -56.2 NC_004084.1 + 35803 0.72 0.358692
Target:  5'- -aGCCgAugcAGUGUACUCC-GGGcCGAGCa -3'
miRNA:   3'- agCGGgU---UCGCAUGAGGaUCC-GCUCG- -5'
16353 3' -56.2 NC_004084.1 + 54749 0.71 0.375865
Target:  5'- -aGCCCGgugGGCGUGCcaucggUCUGGGUGAGg -3'
miRNA:   3'- agCGGGU---UCGCAUGa-----GGAUCCGCUCg -5'
16353 3' -56.2 NC_004084.1 + 51123 0.7 0.411838
Target:  5'- cUCGUCCAGGaGUACgCUUGGGCGAu- -3'
miRNA:   3'- -AGCGGGUUCgCAUGaGGAUCCGCUcg -5'
16353 3' -56.2 NC_004084.1 + 4394 0.7 0.421159
Target:  5'- -aGCCCAAGCagcacgACUUC--GGCGAGCu -3'
miRNA:   3'- agCGGGUUCGca----UGAGGauCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 1701 0.7 0.440176
Target:  5'- cCGgCCGAGUGUGCUUCaguggucgcGGCGAGUc -3'
miRNA:   3'- aGCgGGUUCGCAUGAGGau-------CCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 30659 0.7 0.449866
Target:  5'- aCGCUgUGAGCGgagUACUCCU-GGUGGGCg -3'
miRNA:   3'- aGCGG-GUUCGC---AUGAGGAuCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 54022 0.69 0.52071
Target:  5'- cUCGCCgAAGuCGUGCUgCUUGGGCuGGa -3'
miRNA:   3'- -AGCGGgUUC-GCAUGA-GGAUCCGcUCg -5'
16353 3' -56.2 NC_004084.1 + 29395 0.68 0.531203
Target:  5'- aCGgUCGGGCGgccACUCCUgGGGCGucGCg -3'
miRNA:   3'- aGCgGGUUCGCa--UGAGGA-UCCGCu-CG- -5'
16353 3' -56.2 NC_004084.1 + 13757 0.68 0.541771
Target:  5'- cUCGCCCucGAG-GUcGCg-CUGGGCGGGCu -3'
miRNA:   3'- -AGCGGG--UUCgCA-UGagGAUCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 37559 0.68 0.552408
Target:  5'- aUCGCCgGcGCGgucgACgugccacCCUcGGCGAGCg -3'
miRNA:   3'- -AGCGGgUuCGCa---UGa------GGAuCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 43185 0.67 0.593331
Target:  5'- gUCGCCCGAGgagguggacgaugccCGgugagacgccgauCUCCUGGuGCGAGUc -3'
miRNA:   3'- -AGCGGGUUC---------------GCau-----------GAGGAUC-CGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 29151 0.67 0.595502
Target:  5'- gCGCugCCGGGCGUACaaCCUGGuuCGAGCc -3'
miRNA:   3'- aGCG--GGUUCGCAUGa-GGAUCc-GCUCG- -5'
16353 3' -56.2 NC_004084.1 + 52623 0.67 0.606372
Target:  5'- aCGCCC-GGCGUcggAUaCCaGGGUGAGUg -3'
miRNA:   3'- aGCGGGuUCGCA---UGaGGaUCCGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 15885 0.67 0.606372
Target:  5'- gUCGaUCCGAGCGgcUUCCcgcaGCGGGCg -3'
miRNA:   3'- -AGC-GGGUUCGCauGAGGauc-CGCUCG- -5'
16353 3' -56.2 NC_004084.1 + 10182 0.67 0.617264
Target:  5'- aCGCUCAacgcGGCGggagACUUCUcAGGCGAucGCc -3'
miRNA:   3'- aGCGGGU----UCGCa---UGAGGA-UCCGCU--CG- -5'
16353 3' -56.2 NC_004084.1 + 54546 0.67 0.639077
Target:  5'- aUCGUCCGGcGCuGUAUcaCCgaGGGCGAGCu -3'
miRNA:   3'- -AGCGGGUU-CG-CAUGa-GGa-UCCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.