Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16353 | 5' | -57.2 | NC_004084.1 | + | 10190 | 0.69 | 0.479417 |
Target: 5'- -cGCggCGGGaGACUUcucaggCGAUCGCCUGGa -3' miRNA: 3'- gaCGa-GCUC-CUGAA------GCUAGCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 29507 | 0.68 | 0.540848 |
Target: 5'- -aGCUUG-GGGCUccagccagccUCGAUCGCgcggCCGGUg -3' miRNA: 3'- gaCGAGCuCCUGA----------AGCUAGCG----GGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 47573 | 0.67 | 0.55136 |
Target: 5'- -cGUUCGAGGACgUUCGcgaGCgCGGUg -3' miRNA: 3'- gaCGAGCUCCUG-AAGCuagCGgGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 53412 | 0.67 | 0.55136 |
Target: 5'- aCUcCUCGAGGACcucgUCGAgauGCCCGaGUg -3' miRNA: 3'- -GAcGAGCUCCUGa---AGCUag-CGGGC-CA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 22173 | 0.66 | 0.604693 |
Target: 5'- --aCUCGAGGACgUCGA---CCCGGUa -3' miRNA: 3'- gacGAGCUCCUGaAGCUagcGGGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 47487 | 0.66 | 0.612228 |
Target: 5'- gCUGUUCGAGGugUUCGGcgaagacgacgaacUC-CCCGa- -3' miRNA: 3'- -GACGAGCUCCugAAGCU--------------AGcGGGCca -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 52247 | 0.66 | 0.61546 |
Target: 5'- -aGCUCGAGGuccacCUggagccCGAUCGCCaGGa -3' miRNA: 3'- gaCGAGCUCCu----GAa-----GCUAGCGGgCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 29231 | 0.66 | 0.626242 |
Target: 5'- uUGUUCGcGGGCgaguacUCGucgCGCCCGGc -3' miRNA: 3'- gACGAGCuCCUGa-----AGCua-GCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 49321 | 0.66 | 0.626242 |
Target: 5'- -aGCUCGucGAC----AUCGCCCGGUc -3' miRNA: 3'- gaCGAGCucCUGaagcUAGCGGGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 47015 | 0.66 | 0.641342 |
Target: 5'- --cCUCGAGGACgucgcgaUCGAUgacgaugccggggagUGCCCGGa -3' miRNA: 3'- gacGAGCUCCUGa------AGCUA---------------GCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 19029 | 0.66 | 0.64781 |
Target: 5'- -aGCUCGAacuGGACUUCGAaaccaugcUCGaCCCucGGa -3' miRNA: 3'- gaCGAGCU---CCUGAAGCU--------AGC-GGG--CCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 29077 | 0.78 | 0.125423 |
Target: 5'- -cGCUCGGGGGCgUCG-UCGCCgCGGUa -3' miRNA: 3'- gaCGAGCUCCUGaAGCuAGCGG-GCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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