miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16354 5' -55.7 NC_004084.1 + 28813 0.66 0.768253
Target:  5'- gGUGcCGUUGuGGGcgagcaUCGCGaccgguucGCCGUCUCGGu -3'
miRNA:   3'- -CAU-GCAGC-CCU------AGCGC--------UGGCAGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 49052 0.66 0.768253
Target:  5'- -gACGgcaUCGGaaGAUCGUGACCGUCg--- -3'
miRNA:   3'- caUGC---AGCC--CUAGCGCUGGCAGagcu -5'
16354 5' -55.7 NC_004084.1 + 20960 0.66 0.768253
Target:  5'- -cACGUCGGGGUCGgGAUgCGgaCUCu- -3'
miRNA:   3'- caUGCAGCCCUAGCgCUG-GCa-GAGcu -5'
16354 5' -55.7 NC_004084.1 + 50158 0.66 0.74817
Target:  5'- --uUGUCGaGGAUgucgucagcggCGuCGAUCGUCUCGAc -3'
miRNA:   3'- cauGCAGC-CCUA-----------GC-GCUGGCAGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 30945 0.66 0.736927
Target:  5'- -gACGUCGagcucgaGGA-CGcCGACCGUCUCc- -3'
miRNA:   3'- caUGCAGC-------CCUaGC-GCUGGCAGAGcu -5'
16354 5' -55.7 NC_004084.1 + 12090 0.66 0.727637
Target:  5'- cGUACGacUCGGcGAagGUGACaCGcUCUCGAu -3'
miRNA:   3'- -CAUGC--AGCC-CUagCGCUG-GC-AGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 38453 0.66 0.717228
Target:  5'- cUGCGgccUCGaGGAUCGCGAgaCCGUgaUCGGg -3'
miRNA:   3'- cAUGC---AGC-CCUAGCGCU--GGCAg-AGCU- -5'
16354 5' -55.7 NC_004084.1 + 55912 0.67 0.685562
Target:  5'- -gACGaagggcuggaUCGGGAaUGCGAUCGUCgCGAa -3'
miRNA:   3'- caUGC----------AGCCCUaGCGCUGGCAGaGCU- -5'
16354 5' -55.7 NC_004084.1 + 19808 0.67 0.685562
Target:  5'- -cGCG--GGGAgucguucCGCGACgGUCUCGAg -3'
miRNA:   3'- caUGCagCCCUa------GCGCUGgCAGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 31109 0.67 0.679167
Target:  5'- cGUACGUCGccaGGAUgaugaacagcggcgcCGCGAUCGUCagCGGu -3'
miRNA:   3'- -CAUGCAGC---CCUA---------------GCGCUGGCAGa-GCU- -5'
16354 5' -55.7 NC_004084.1 + 5808 0.67 0.674895
Target:  5'- -gACGcCGGGcgUGuCGACUGcCUCGAc -3'
miRNA:   3'- caUGCaGCCCuaGC-GCUGGCaGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 48397 0.67 0.664189
Target:  5'- -gACG-CGGcAUCGUGGCCGccaUCUCGGa -3'
miRNA:   3'- caUGCaGCCcUAGCGCUGGC---AGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 35212 0.68 0.653455
Target:  5'- --uCGUCGGGAucgagccgacgaUCGCGAUCGaCgUCGAc -3'
miRNA:   3'- cauGCAGCCCU------------AGCGCUGGCaG-AGCU- -5'
16354 5' -55.7 NC_004084.1 + 52950 0.68 0.653455
Target:  5'- --cCGUCGGcGucGUCGUGAUCGUCgCGAg -3'
miRNA:   3'- cauGCAGCC-C--UAGCGCUGGCAGaGCU- -5'
16354 5' -55.7 NC_004084.1 + 13793 0.68 0.653455
Target:  5'- -cGCGUcCGGuuGGUCGCGACCGaggCGAu -3'
miRNA:   3'- caUGCA-GCC--CUAGCGCUGGCagaGCU- -5'
16354 5' -55.7 NC_004084.1 + 12407 0.68 0.653455
Target:  5'- --uCGUaGcGGAUCGUGACCGUCUUc- -3'
miRNA:   3'- cauGCAgC-CCUAGCGCUGGCAGAGcu -5'
16354 5' -55.7 NC_004084.1 + 57095 0.68 0.642701
Target:  5'- ----aUCGGGA-CGCaGACCGcCUCGAu -3'
miRNA:   3'- caugcAGCCCUaGCG-CUGGCaGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 48988 0.68 0.631939
Target:  5'- -gACGUCGcGGcccAUCGCGcgguCCGUgUCGAu -3'
miRNA:   3'- caUGCAGC-CC---UAGCGCu---GGCAgAGCU- -5'
16354 5' -55.7 NC_004084.1 + 14858 0.68 0.631939
Target:  5'- --uCGUCGGGAUgaCGGCCGccggUCUCGGu -3'
miRNA:   3'- cauGCAGCCCUAgcGCUGGC----AGAGCU- -5'
16354 5' -55.7 NC_004084.1 + 54238 0.68 0.621177
Target:  5'- -gACGUCGGagcGAUCaGCG-CCGUCggCGAg -3'
miRNA:   3'- caUGCAGCC---CUAG-CGCuGGCAGa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.