Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16355 | 3' | -55.4 | NC_004084.1 | + | 17826 | 0.68 | 0.649161 |
Target: 5'- -cGGGAACUCCUCGccGaguucgauggugaccUCGUCGCC-Cg -3' miRNA: 3'- ucCCCUUGAGGAGC--U---------------AGUAGCGGaGg -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 41055 | 0.67 | 0.666533 |
Target: 5'- cGGcGGAACggauguucuccUCaCUCGAgcccUCGCCUCCg -3' miRNA: 3'- uCC-CCUUG-----------AG-GAGCUagu-AGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 35955 | 0.67 | 0.670865 |
Target: 5'- cGGGGucgGCggCCgugaccagucccgacUCGAUCAgcUCGUCUCCg -3' miRNA: 3'- uCCCCu--UGa-GG---------------AGCUAGU--AGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 1844 | 0.67 | 0.676272 |
Target: 5'- cGGuGuGGCUCCUgcagcgcgacggaCGA-CGUCGCCUCCu -3' miRNA: 3'- uCC-CcUUGAGGA-------------GCUaGUAGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 31447 | 0.66 | 0.705258 |
Target: 5'- cAGGGuGACUgcCCUCGAggacggcagcacgCAUCGCUUCg -3' miRNA: 3'- -UCCCcUUGA--GGAGCUa------------GUAGCGGAGg -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 16368 | 0.66 | 0.729557 |
Target: 5'- uGGuGGAGCUCgguagaauccucaCUCGA-CAUCGgCCUCa -3' miRNA: 3'- uCC-CCUUGAG-------------GAGCUaGUAGC-GGAGg -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 5921 | 0.66 | 0.730603 |
Target: 5'- cAGGGGuAgUCUUCGAacgacaugacgUCGcgcuUCGCCUCg -3' miRNA: 3'- -UCCCCuUgAGGAGCU-----------AGU----AGCGGAGg -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 10904 | 0.66 | 0.741008 |
Target: 5'- -cGGGuACUCC-CGAucggggaguUCGUCGUCUUCg -3' miRNA: 3'- ucCCCuUGAGGaGCU---------AGUAGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 38483 | 0.66 | 0.745141 |
Target: 5'- cGGGGuuGAACggauccucgcCCUCGAUCGUCGCgagcaucguucgaagUUCCu -3' miRNA: 3'- -UCCC--CUUGa---------GGAGCUAGUAGCG---------------GAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 7924 | 0.66 | 0.751306 |
Target: 5'- cGGGucGAuCUCCUCGGUCAgUUGCUcgugcggcguUCCa -3' miRNA: 3'- uCCC--CUuGAGGAGCUAGU-AGCGG----------AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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