Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16355 | 3' | -55.4 | NC_004084.1 | + | 35955 | 0.67 | 0.670865 |
Target: 5'- cGGGGucgGCggCCgugaccagucccgacUCGAUCAgcUCGUCUCCg -3' miRNA: 3'- uCCCCu--UGa-GG---------------AGCUAGU--AGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 38483 | 0.66 | 0.745141 |
Target: 5'- cGGGGuuGAACggauccucgcCCUCGAUCGUCGCgagcaucguucgaagUUCCu -3' miRNA: 3'- -UCCC--CUUGa---------GGAGCUAGUAGCG---------------GAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 39012 | 0.68 | 0.623043 |
Target: 5'- cGGGGAucacgACUCCgaaacCAUCGCCUgCCc -3' miRNA: 3'- uCCCCU-----UGAGGagcuaGUAGCGGA-GG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 41055 | 0.67 | 0.666533 |
Target: 5'- cGGcGGAACggauguucuccUCaCUCGAgcccUCGCCUCCg -3' miRNA: 3'- uCC-CCUUG-----------AG-GAGCUagu-AGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 46434 | 0.72 | 0.389808 |
Target: 5'- uGGGGAACUCgUCGA--GUUGaCUCCa -3' miRNA: 3'- uCCCCUUGAGgAGCUagUAGCgGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 50547 | 0.69 | 0.568914 |
Target: 5'- gAGGagcGGAGuCUCCUCGAUCAUguCCgUCCa -3' miRNA: 3'- -UCC---CCUU-GAGGAGCUAGUAgcGG-AGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 51510 | 0.69 | 0.568914 |
Target: 5'- gAGuGGGAGCUCgUCGAgacgGUCGCgaUCCc -3' miRNA: 3'- -UC-CCCUUGAGgAGCUag--UAGCGg-AGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 53440 | 0.72 | 0.406077 |
Target: 5'- gAGuGGGuccccgccgauCUCCUCGuggGUCGUCGUCUCCc -3' miRNA: 3'- -UC-CCCuu---------GAGGAGC---UAGUAGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 53521 | 0.72 | 0.380956 |
Target: 5'- cGaGGAACUCCUCGua---CGCCUCCu -3' miRNA: 3'- uCcCCUUGAGGAGCuaguaGCGGAGG- -5' |
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16355 | 3' | -55.4 | NC_004084.1 | + | 54773 | 0.68 | 0.601306 |
Target: 5'- uGGGuGAGgaUCUCGAUCGugagccagccgaUCGCCUCg -3' miRNA: 3'- uCCC-CUUgaGGAGCUAGU------------AGCGGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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