miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16356 5' -55.1 NC_004084.1 + 15083 0.66 0.774859
Target:  5'- cGUUCGA-GAcCGUCCA-CUCGucGUCg -3'
miRNA:   3'- aCGAGCUgCU-GCAGGUaGAGCucCAG- -5'
16356 5' -55.1 NC_004084.1 + 16647 0.66 0.774859
Target:  5'- cGUcgUCGACGuCGUCCGg---GAGGUCc -3'
miRNA:   3'- aCG--AGCUGCuGCAGGUagagCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 30443 0.66 0.774859
Target:  5'- gGCgagGACGACGUCCcgCU-GGGGa- -3'
miRNA:   3'- aCGag-CUGCUGCAGGuaGAgCUCCag -5'
16356 5' -55.1 NC_004084.1 + 762 0.66 0.770863
Target:  5'- cGUUCGACGAaGUCCGUCcacgauucaUCGucgcccuuguguuGGUCg -3'
miRNA:   3'- aCGAGCUGCUgCAGGUAG---------AGCu------------CCAG- -5'
16356 5' -55.1 NC_004084.1 + 47593 0.66 0.764827
Target:  5'- cGCggUGGCGAC-UCUcacaagAUCUCGAGGUg -3'
miRNA:   3'- aCGa-GCUGCUGcAGG------UAGAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 1012 0.66 0.75466
Target:  5'- aGCUCGccgGCGACGUCgAcgcgaUCGGGGg- -3'
miRNA:   3'- aCGAGC---UGCUGCAGgUag---AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 18565 0.66 0.748501
Target:  5'- gUGCUCGACGGCG-CCGcggccgccgauggaCUCGAGcGcCa -3'
miRNA:   3'- -ACGAGCUGCUGCaGGUa-------------GAGCUC-CaG- -5'
16356 5' -55.1 NC_004084.1 + 26197 0.66 0.744371
Target:  5'- --gUCGGCGuCGUCgaggagCAUCUCGAGG-Cg -3'
miRNA:   3'- acgAGCUGCuGCAG------GUAGAGCUCCaG- -5'
16356 5' -55.1 NC_004084.1 + 5007 0.66 0.744371
Target:  5'- -uCUCGACGAgGUCC---UCGAGGa- -3'
miRNA:   3'- acGAGCUGCUgCAGGuagAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 17166 0.66 0.744371
Target:  5'- cGC-CGGCGACGUCgAaggCGAGGg- -3'
miRNA:   3'- aCGaGCUGCUGCAGgUagaGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 28332 0.66 0.744371
Target:  5'- aGCUCGcCGcCGUCCuucuUCUCGcGGa- -3'
miRNA:   3'- aCGAGCuGCuGCAGGu---AGAGCuCCag -5'
16356 5' -55.1 NC_004084.1 + 40744 0.66 0.744371
Target:  5'- aGCUCGACcaGCGUCgCccugugCUCGGGuGUCg -3'
miRNA:   3'- aCGAGCUGc-UGCAG-Gua----GAGCUC-CAG- -5'
16356 5' -55.1 NC_004084.1 + 39617 0.66 0.73397
Target:  5'- gGC-CGGCGACGUCC-UCgaCGA-GUCg -3'
miRNA:   3'- aCGaGCUGCUGCAGGuAGa-GCUcCAG- -5'
16356 5' -55.1 NC_004084.1 + 18201 0.66 0.73397
Target:  5'- aGCuUCcGCGucuccuCGUCCAgCUCGAGGUg -3'
miRNA:   3'- aCG-AGcUGCu-----GCAGGUaGAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 27824 0.66 0.73397
Target:  5'- --aUCGaccGCGGCGUCCg---CGAGGUCa -3'
miRNA:   3'- acgAGC---UGCUGCAGGuagaGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 42013 0.66 0.73397
Target:  5'- uUGCUCGA-GugG-CCGUCgcgagCGAGG-Cg -3'
miRNA:   3'- -ACGAGCUgCugCaGGUAGa----GCUCCaG- -5'
16356 5' -55.1 NC_004084.1 + 6126 0.66 0.723469
Target:  5'- aGCU-GugGuCGUUCGUCggUGAGGUCc -3'
miRNA:   3'- aCGAgCugCuGCAGGUAGa-GCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 8999 0.66 0.723469
Target:  5'- aGUUCGACGAgGacUCCuggUUCGAGGa- -3'
miRNA:   3'- aCGAGCUGCUgC--AGGua-GAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 56034 0.66 0.722413
Target:  5'- aGCUCGAgGAgGUCCcgGUCaaguucuacgacuUCGAGGa- -3'
miRNA:   3'- aCGAGCUgCUgCAGG--UAG-------------AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 5311 0.67 0.702209
Target:  5'- -aCUCGGCGGC-UCCGUCgagugccuccUgGAGGUCu -3'
miRNA:   3'- acGAGCUGCUGcAGGUAG----------AgCUCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.