miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16356 5' -55.1 NC_004084.1 + 6685 1.1 0.001007
Target:  5'- cUGCUCGACGACGUCCAUCUCGAGGUCa -3'
miRNA:   3'- -ACGAGCUGCUGCAGGUAGAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 9234 0.88 0.036924
Target:  5'- cUGCUCGAUcagGGCGUCCAgcgUCUCGGGGUCg -3'
miRNA:   3'- -ACGAGCUG---CUGCAGGU---AGAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 49870 0.78 0.170388
Target:  5'- gGaCUCGGugagGACGUCgAUCUCGAGGUCg -3'
miRNA:   3'- aC-GAGCUg---CUGCAGgUAGAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 30937 0.77 0.200046
Target:  5'- cGCUCGuCGACGUCgAgCUCGAGGa- -3'
miRNA:   3'- aCGAGCuGCUGCAGgUaGAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 56924 0.76 0.2281
Target:  5'- aGCUCGaggGCGACGUCUAcCagGAGGUCg -3'
miRNA:   3'- aCGAGC---UGCUGCAGGUaGagCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 26308 0.74 0.312061
Target:  5'- gUGCUCGACGAcgagcugcucgagcuCGUCCAUCcguucaaguUCGGGGa- -3'
miRNA:   3'- -ACGAGCUGCU---------------GCAGGUAG---------AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 47282 0.74 0.32446
Target:  5'- aGgUCGACGACGUCCAgcggCUCuGGGa- -3'
miRNA:   3'- aCgAGCUGCUGCAGGUa---GAGcUCCag -5'
16356 5' -55.1 NC_004084.1 + 42662 0.73 0.348686
Target:  5'- aGUcCGACGACGUCC-UCcCGAGcGUCa -3'
miRNA:   3'- aCGaGCUGCUGCAGGuAGaGCUC-CAG- -5'
16356 5' -55.1 NC_004084.1 + 9126 0.73 0.357042
Target:  5'- gGaCUCGAuCGGCGUCCGUCgggcggaagUCGAGGg- -3'
miRNA:   3'- aC-GAGCU-GCUGCAGGUAG---------AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 40818 0.72 0.400896
Target:  5'- aGCUggCGAuCGACGUCCAcguUCcggaggUCGAGGUCc -3'
miRNA:   3'- aCGA--GCU-GCUGCAGGU---AG------AGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 15022 0.72 0.428802
Target:  5'- gGCUCGucgagcguCGACGgCCA-CUCGAGGUg -3'
miRNA:   3'- aCGAGCu-------GCUGCaGGUaGAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 57774 0.71 0.438356
Target:  5'- aGCUUgcgGGCGAUGUCCuUCUCGucGUCc -3'
miRNA:   3'- aCGAG---CUGCUGCAGGuAGAGCucCAG- -5'
16356 5' -55.1 NC_004084.1 + 5710 0.71 0.47774
Target:  5'- aGUUCGAgGACGUCgcUCgggcCGAGGUCc -3'
miRNA:   3'- aCGAGCUgCUGCAGguAGa---GCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 57972 0.71 0.47774
Target:  5'- -cCUgGGCGuccucCG-CCGUCUCGAGGUCg -3'
miRNA:   3'- acGAgCUGCu----GCaGGUAGAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 4162 0.7 0.498078
Target:  5'- gGC-CGAUGACGUCgCGguugCUCG-GGUCu -3'
miRNA:   3'- aCGaGCUGCUGCAG-GUa---GAGCuCCAG- -5'
16356 5' -55.1 NC_004084.1 + 5754 0.7 0.498078
Target:  5'- cGcCUCGACGACGaucUCCGUCUcgccgcagcCGAGG-Ca -3'
miRNA:   3'- aC-GAGCUGCUGC---AGGUAGA---------GCUCCaG- -5'
16356 5' -55.1 NC_004084.1 + 36197 0.7 0.515664
Target:  5'- cGUUCGACGGCGaggcggggaaccucUCCGgucucCUCGAGGg- -3'
miRNA:   3'- aCGAGCUGCUGC--------------AGGUa----GAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 57601 0.7 0.517749
Target:  5'- cGuCUCGaACGgguugaggaguucGCGcUUCGUCUCGAGGUCg -3'
miRNA:   3'- aC-GAGC-UGC-------------UGC-AGGUAGAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 57407 0.7 0.518793
Target:  5'- cGCgUCGACGuCG-CCGgcgagCUCGAGGUg -3'
miRNA:   3'- aCG-AGCUGCuGCaGGUa----GAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 52586 0.7 0.529278
Target:  5'- cUGCggCGGCGugGUCCGgugggUCGAGG-Ca -3'
miRNA:   3'- -ACGa-GCUGCugCAGGUag---AGCUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.