miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16356 5' -55.1 NC_004084.1 + 18117 0.67 0.695774
Target:  5'- aGgUCGGgGAUGUCCggCUCGgcccggauggaguccGGGUCg -3'
miRNA:   3'- aCgAGCUgCUGCAGGuaGAGC---------------UCCAG- -5'
16356 5' -55.1 NC_004084.1 + 52043 0.67 0.691473
Target:  5'- cGCUCucguaGAgGUUUuUCUCGAGGUCg -3'
miRNA:   3'- aCGAGcug--CUgCAGGuAGAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 36189 0.67 0.691473
Target:  5'- -aCUCGGCGagauGCGUUCGguaCUCGAGcGUCg -3'
miRNA:   3'- acGAGCUGC----UGCAGGUa--GAGCUC-CAG- -5'
16356 5' -55.1 NC_004084.1 + 15925 0.67 0.691473
Target:  5'- cGCUCuuUGACGUCU---UUGAGGUCu -3'
miRNA:   3'- aCGAGcuGCUGCAGGuagAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 45383 0.67 0.681762
Target:  5'- aGCgUGuCGAuCGUCCGgucgugaagguguugCUCGAGGUCg -3'
miRNA:   3'- aCGaGCuGCU-GCAGGUa--------------GAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 6714 0.67 0.68068
Target:  5'- cGC-CGGCGAUGUCCGUC-CGguacGGGa- -3'
miRNA:   3'- aCGaGCUGCUGCAGGUAGaGC----UCCag -5'
16356 5' -55.1 NC_004084.1 + 58072 0.67 0.68068
Target:  5'- gUGUUCGACGGCGUugucguugCCGUCcu--GGUCg -3'
miRNA:   3'- -ACGAGCUGCUGCA--------GGUAGagcuCCAG- -5'
16356 5' -55.1 NC_004084.1 + 46702 0.67 0.68068
Target:  5'- cGC-CGGCGACGUCUAcCgcgaCGAguGGUCg -3'
miRNA:   3'- aCGaGCUGCUGCAGGUaGa---GCU--CCAG- -5'
16356 5' -55.1 NC_004084.1 + 7256 0.67 0.68068
Target:  5'- gUGCUCGGCGA---CCGUCUCGA--UCg -3'
miRNA:   3'- -ACGAGCUGCUgcaGGUAGAGCUccAG- -5'
16356 5' -55.1 NC_004084.1 + 47941 0.67 0.68068
Target:  5'- cGCUCGAgGcCGUCCGUCagGccGUCc -3'
miRNA:   3'- aCGAGCUgCuGCAGGUAGagCucCAG- -5'
16356 5' -55.1 NC_004084.1 + 39714 0.67 0.669842
Target:  5'- aGUgacggCGACGACG-CCGUCgaCGAGGa- -3'
miRNA:   3'- aCGa----GCUGCUGCaGGUAGa-GCUCCag -5'
16356 5' -55.1 NC_004084.1 + 1223 0.67 0.669842
Target:  5'- gGCUCGGCGGCGgga---UCGAGGg- -3'
miRNA:   3'- aCGAGCUGCUGCagguagAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 934 0.68 0.663322
Target:  5'- cUGCUggUGACGcucccggaggaggucGCGggCCAUCUCGcGGUCg -3'
miRNA:   3'- -ACGA--GCUGC---------------UGCa-GGUAGAGCuCCAG- -5'
16356 5' -55.1 NC_004084.1 + 2693 0.68 0.658969
Target:  5'- cGCgCGACGAU-UCCucgccucgAUCUCGAGGUg -3'
miRNA:   3'- aCGaGCUGCUGcAGG--------UAGAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 16405 0.68 0.658969
Target:  5'- cGCUCG-CGACGgCCA-CUCGAGcaaagacggcGUCg -3'
miRNA:   3'- aCGAGCuGCUGCaGGUaGAGCUC----------CAG- -5'
16356 5' -55.1 NC_004084.1 + 18914 0.68 0.637161
Target:  5'- cGCgaaCGAUGACGUCCuggaugggaUCGAGGg- -3'
miRNA:   3'- aCGa--GCUGCUGCAGGuag------AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 19640 0.68 0.637161
Target:  5'- gGCUCGACGacgaugGCGUCCAUgUgGAGccagaacuguucGUCg -3'
miRNA:   3'- aCGAGCUGC------UGCAGGUAgAgCUC------------CAG- -5'
16356 5' -55.1 NC_004084.1 + 20121 0.68 0.630611
Target:  5'- cGCUCGuCGACGgaacgucggucggauUCgAUCUgGAGGUg -3'
miRNA:   3'- aCGAGCuGCUGC---------------AGgUAGAgCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 50963 0.68 0.615333
Target:  5'- cGCUCGAguCGcCGUCgGaCUCcGAGGUCu -3'
miRNA:   3'- aCGAGCU--GCuGCAGgUaGAG-CUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 53269 0.68 0.615333
Target:  5'- cUGcCUCaggGACGACGUCgGUCgccacgcCGAGGUUg -3'
miRNA:   3'- -AC-GAG---CUGCUGCAGgUAGa------GCUCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.