miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16356 5' -55.1 NC_004084.1 + 762 0.66 0.770863
Target:  5'- cGUUCGACGAaGUCCGUCcacgauucaUCGucgcccuuguguuGGUCg -3'
miRNA:   3'- aCGAGCUGCUgCAGGUAG---------AGCu------------CCAG- -5'
16356 5' -55.1 NC_004084.1 + 934 0.68 0.663322
Target:  5'- cUGCUggUGACGcucccggaggaggucGCGggCCAUCUCGcGGUCg -3'
miRNA:   3'- -ACGA--GCUGC---------------UGCa-GGUAGAGCuCCAG- -5'
16356 5' -55.1 NC_004084.1 + 1012 0.66 0.75466
Target:  5'- aGCUCGccgGCGACGUCgAcgcgaUCGGGGg- -3'
miRNA:   3'- aCGAGC---UGCUGCAGgUag---AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 1223 0.67 0.669842
Target:  5'- gGCUCGGCGGCGgga---UCGAGGg- -3'
miRNA:   3'- aCGAGCUGCUGCagguagAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 2693 0.68 0.658969
Target:  5'- cGCgCGACGAU-UCCucgccucgAUCUCGAGGUg -3'
miRNA:   3'- aCGaGCUGCUGcAGG--------UAGAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 4162 0.7 0.498078
Target:  5'- gGC-CGAUGACGUCgCGguugCUCG-GGUCu -3'
miRNA:   3'- aCGaGCUGCUGCAG-GUa---GAGCuCCAG- -5'
16356 5' -55.1 NC_004084.1 + 5007 0.66 0.744371
Target:  5'- -uCUCGACGAgGUCC---UCGAGGa- -3'
miRNA:   3'- acGAGCUGCUgCAGGuagAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 5270 0.69 0.550473
Target:  5'- gGCcucgUCGACGACGUCCcgCagCGGauGGUCc -3'
miRNA:   3'- aCG----AGCUGCUGCAGGuaGa-GCU--CCAG- -5'
16356 5' -55.1 NC_004084.1 + 5311 0.67 0.702209
Target:  5'- -aCUCGGCGGC-UCCGUCgagugccuccUgGAGGUCu -3'
miRNA:   3'- acGAGCUGCUGcAGGUAG----------AgCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 5499 0.69 0.550473
Target:  5'- cGCUCGGCGuAUGccucgaccUCCugcuuggcCUCGAGGUCg -3'
miRNA:   3'- aCGAGCUGC-UGC--------AGGua------GAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 5710 0.71 0.47774
Target:  5'- aGUUCGAgGACGUCgcUCgggcCGAGGUCc -3'
miRNA:   3'- aCGAGCUgCUGCAGguAGa---GCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 5754 0.7 0.498078
Target:  5'- cGcCUCGACGACGaucUCCGUCUcgccgcagcCGAGG-Ca -3'
miRNA:   3'- aC-GAGCUGCUGC---AGGUAGA---------GCUCCaG- -5'
16356 5' -55.1 NC_004084.1 + 6126 0.66 0.723469
Target:  5'- aGCU-GugGuCGUUCGUCggUGAGGUCc -3'
miRNA:   3'- aCGAgCugCuGCAGGUAGa-GCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 6685 1.1 0.001007
Target:  5'- cUGCUCGACGACGUCCAUCUCGAGGUCa -3'
miRNA:   3'- -ACGAGCUGCUGCAGGUAGAGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 6714 0.67 0.68068
Target:  5'- cGC-CGGCGAUGUCCGUC-CGguacGGGa- -3'
miRNA:   3'- aCGaGCUGCUGCAGGUAGaGC----UCCag -5'
16356 5' -55.1 NC_004084.1 + 7016 0.68 0.604437
Target:  5'- gGcCUCGACGGCGUcggccgCCAUCUCGuuGcCg -3'
miRNA:   3'- aC-GAGCUGCUGCA------GGUAGAGCucCaG- -5'
16356 5' -55.1 NC_004084.1 + 7256 0.67 0.68068
Target:  5'- gUGCUCGGCGA---CCGUCUCGA--UCg -3'
miRNA:   3'- -ACGAGCUGCUgcaGGUAGAGCUccAG- -5'
16356 5' -55.1 NC_004084.1 + 8999 0.66 0.723469
Target:  5'- aGUUCGACGAgGacUCCuggUUCGAGGa- -3'
miRNA:   3'- aCGAGCUGCUgC--AGGua-GAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 9126 0.73 0.357042
Target:  5'- gGaCUCGAuCGGCGUCCGUCgggcggaagUCGAGGg- -3'
miRNA:   3'- aC-GAGCU-GCUGCAGGUAG---------AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 9234 0.88 0.036924
Target:  5'- cUGCUCGAUcagGGCGUCCAgcgUCUCGGGGUCg -3'
miRNA:   3'- -ACGAGCUG---CUGCAGGU---AGAGCUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.