miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16356 5' -55.1 NC_004084.1 + 46702 0.67 0.68068
Target:  5'- cGC-CGGCGACGUCUAcCgcgaCGAguGGUCg -3'
miRNA:   3'- aCGaGCUGCUGCAGGUaGa---GCU--CCAG- -5'
16356 5' -55.1 NC_004084.1 + 39521 0.69 0.582723
Target:  5'- cGUUCG-CGACGUCC---UCGAGGaUCu -3'
miRNA:   3'- aCGAGCuGCUGCAGGuagAGCUCC-AG- -5'
16356 5' -55.1 NC_004084.1 + 20028 0.69 0.582723
Target:  5'- cGCUCGAggaCGACGaUCgCGUCUCGucaGUCg -3'
miRNA:   3'- aCGAGCU---GCUGC-AG-GUAGAGCuc-CAG- -5'
16356 5' -55.1 NC_004084.1 + 20121 0.68 0.630611
Target:  5'- cGCUCGuCGACGgaacgucggucggauUCgAUCUgGAGGUg -3'
miRNA:   3'- aCGAGCuGCUGC---------------AGgUAGAgCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 19640 0.68 0.637161
Target:  5'- gGCUCGACGacgaugGCGUCCAUgUgGAGccagaacuguucGUCg -3'
miRNA:   3'- aCGAGCUGC------UGCAGGUAgAgCUC------------CAG- -5'
16356 5' -55.1 NC_004084.1 + 2693 0.68 0.658969
Target:  5'- cGCgCGACGAU-UCCucgccucgAUCUCGAGGUg -3'
miRNA:   3'- aCGaGCUGCUGcAGG--------UAGAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 16405 0.68 0.658969
Target:  5'- cGCUCG-CGACGgCCA-CUCGAGcaaagacggcGUCg -3'
miRNA:   3'- aCGAGCuGCUGCaGGUaGAGCUC----------CAG- -5'
16356 5' -55.1 NC_004084.1 + 1223 0.67 0.669842
Target:  5'- gGCUCGGCGGCGgga---UCGAGGg- -3'
miRNA:   3'- aCGAGCUGCUGCagguagAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 39714 0.67 0.669842
Target:  5'- aGUgacggCGACGACG-CCGUCgaCGAGGa- -3'
miRNA:   3'- aCGa----GCUGCUGCaGGUAGa-GCUCCag -5'
16356 5' -55.1 NC_004084.1 + 35314 0.69 0.582723
Target:  5'- cGUUCGuCGGCuggCUAUC-CGAGGUCg -3'
miRNA:   3'- aCGAGCuGCUGca-GGUAGaGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 49970 0.69 0.571922
Target:  5'- gGCUCGGCGAC--UCGUCUCGcGGa- -3'
miRNA:   3'- aCGAGCUGCUGcaGGUAGAGCuCCag -5'
16356 5' -55.1 NC_004084.1 + 22860 0.7 0.539841
Target:  5'- aUGCUCGACGAaccCCGUgagaucacaCUCGAGGcCa -3'
miRNA:   3'- -ACGAGCUGCUgcaGGUA---------GAGCUCCaG- -5'
16356 5' -55.1 NC_004084.1 + 47282 0.74 0.32446
Target:  5'- aGgUCGACGACGUCCAgcggCUCuGGGa- -3'
miRNA:   3'- aCgAGCUGCUGCAGGUa---GAGcUCCag -5'
16356 5' -55.1 NC_004084.1 + 42662 0.73 0.348686
Target:  5'- aGUcCGACGACGUCC-UCcCGAGcGUCa -3'
miRNA:   3'- aCGaGCUGCUGCAGGuAGaGCUC-CAG- -5'
16356 5' -55.1 NC_004084.1 + 9126 0.73 0.357042
Target:  5'- gGaCUCGAuCGGCGUCCGUCgggcggaagUCGAGGg- -3'
miRNA:   3'- aC-GAGCU-GCUGCAGGUAG---------AGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 40818 0.72 0.400896
Target:  5'- aGCUggCGAuCGACGUCCAcguUCcggaggUCGAGGUCc -3'
miRNA:   3'- aCGA--GCU-GCUGCAGGU---AG------AGCUCCAG- -5'
16356 5' -55.1 NC_004084.1 + 36197 0.7 0.515664
Target:  5'- cGUUCGACGGCGaggcggggaaccucUCCGgucucCUCGAGGg- -3'
miRNA:   3'- aCGAGCUGCUGC--------------AGGUa----GAGCUCCag -5'
16356 5' -55.1 NC_004084.1 + 57407 0.7 0.518793
Target:  5'- cGCgUCGACGuCG-CCGgcgagCUCGAGGUg -3'
miRNA:   3'- aCG-AGCUGCuGCaGGUa----GAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 31202 0.7 0.529278
Target:  5'- cGCgUCGACGuCGUCgCGaacCUCGAGGUa -3'
miRNA:   3'- aCG-AGCUGCuGCAG-GUa--GAGCUCCAg -5'
16356 5' -55.1 NC_004084.1 + 52586 0.7 0.529278
Target:  5'- cUGCggCGGCGugGUCCGgugggUCGAGG-Ca -3'
miRNA:   3'- -ACGa-GCUGCugCAGGUag---AGCUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.