Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16358 | 5' | -61.5 | NC_004084.1 | + | 48648 | 0.66 | 0.436372 |
Target: 5'- gGCCGCAGCCGAugauGGaagcggGCUCAUUCg-- -3' miRNA: 3'- gCGGCGUCGGCU----CCg-----UGAGUGGGacc -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 9454 | 0.66 | 0.395202 |
Target: 5'- aCGCCGUAGUCGGcGGCAUcguguuugucccaggUCACCUc-- -3' miRNA: 3'- -GCGGCGUCGGCU-CCGUG---------------AGUGGGacc -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 15837 | 0.66 | 0.415475 |
Target: 5'- uCGuuGUAGCaCGAguGGCAgCUCGCCCcauccaucgucgggUGGa -3' miRNA: 3'- -GCggCGUCG-GCU--CCGU-GAGUGGG--------------ACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 54254 | 0.66 | 0.445645 |
Target: 5'- gCGCCGUcggcgaGGuuGAGGUAgucCUCGuuCUGGa -3' miRNA: 3'- -GCGGCG------UCggCUCCGU---GAGUggGACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 37563 | 0.66 | 0.445645 |
Target: 5'- cCGgCGCGGUCGAcGUGC-CACCCUcGGc -3' miRNA: 3'- -GCgGCGUCGGCUcCGUGaGUGGGA-CC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 12239 | 0.66 | 0.436372 |
Target: 5'- uCGCCGCcuaccAGCUG-GGCAagUUCgcggugagcgaGCCCUGGu -3' miRNA: 3'- -GCGGCG-----UCGGCuCCGU--GAG-----------UGGGACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 36431 | 0.66 | 0.409238 |
Target: 5'- uCGCCGCAGaCCu--GUACgaCAUCCUGGg -3' miRNA: 3'- -GCGGCGUC-GGcucCGUGa-GUGGGACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 47135 | 0.66 | 0.400429 |
Target: 5'- aCGCCG-AGCgagaGGGGCACUCGuaccUCCUGc -3' miRNA: 3'- -GCGGCgUCGg---CUCCGUGAGU----GGGACc -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 5765 | 0.67 | 0.38318 |
Target: 5'- uGCCcCcGCCGGGGC-CUCugCUUGa -3' miRNA: 3'- gCGGcGuCGGCUCCGuGAGugGGACc -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 9515 | 0.67 | 0.38318 |
Target: 5'- aGUCGUGGCCGAccgaccgacGGUGCaUCACUgUGGa -3' miRNA: 3'- gCGGCGUCGGCU---------CCGUG-AGUGGgACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 37530 | 0.67 | 0.358248 |
Target: 5'- -aCCGCuccgacuGCCGGGGCugACUgACCgUGGa -3' miRNA: 3'- gcGGCGu------CGGCUCCG--UGAgUGGgACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 48493 | 0.67 | 0.374742 |
Target: 5'- uCGCUGaggcucGUCGAGGCGCUCuugUCUUGGa -3' miRNA: 3'- -GCGGCgu----CGGCUCCGUGAGu--GGGACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 13879 | 0.68 | 0.326811 |
Target: 5'- gGCaccaGCAGCCGAGGaC-CUUcCCCUGc -3' miRNA: 3'- gCGg---CGUCGGCUCC-GuGAGuGGGACc -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 22865 | 0.68 | 0.297466 |
Target: 5'- aGCUGCGuCCGGcGGCACUCGCCg--- -3' miRNA: 3'- gCGGCGUcGGCU-CCGUGAGUGGgacc -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 1502 | 0.68 | 0.334475 |
Target: 5'- aCGUCGCccucgagcucgaAGCCGAuGCACUCGCggucggUCUGGa -3' miRNA: 3'- -GCGGCG------------UCGGCUcCGUGAGUG------GGACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 37578 | 0.68 | 0.297466 |
Target: 5'- uCGUCGacgAGCCGAGGCACUC-UCggGGa -3' miRNA: 3'- -GCGGCg--UCGGCUCCGUGAGuGGgaCC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 3179 | 0.68 | 0.334475 |
Target: 5'- uCGUCGaCGGCgaggacgugaaCGAGGCgguggcgaaGCUCACCaCUGGa -3' miRNA: 3'- -GCGGC-GUCG-----------GCUCCG---------UGAGUGG-GACC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 18067 | 0.69 | 0.257349 |
Target: 5'- uGCCGCGGUCGAuGUGC-CGCCCUucgaGGa -3' miRNA: 3'- gCGGCGUCGGCUcCGUGaGUGGGA----CC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 11375 | 0.7 | 0.251109 |
Target: 5'- -aCCGCAGUCcGGGCACUC-CCC-GGc -3' miRNA: 3'- gcGGCGUCGGcUCCGUGAGuGGGaCC- -5' |
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16358 | 5' | -61.5 | NC_004084.1 | + | 26962 | 0.7 | 0.244391 |
Target: 5'- uGCgUGCuGCCGuccucgaGGGCAgUCACCCUGa -3' miRNA: 3'- gCG-GCGuCGGC-------UCCGUgAGUGGGACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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