miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 3' -55.3 NC_001347.2 + 132664 1.15 0.003108
Target:  5'- gGGACGUCUUGCCGUCGUCCGUCACCCg -3'
miRNA:   3'- -CCUGCAGAACGGCAGCAGGCAGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 17123 0.77 0.562316
Target:  5'- cGGuCGUCc-GCCGUCGgCCGcCGCCCa -3'
miRNA:   3'- -CCuGCAGaaCGGCAGCaGGCaGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 193122 0.73 0.726037
Target:  5'- cGGCGUCUUccuccucGUCGUCGccgCCGUCGCgCCu -3'
miRNA:   3'- cCUGCAGAA-------CGGCAGCa--GGCAGUG-GG- -5'
1636 3' -55.3 NC_001347.2 + 38433 0.73 0.736362
Target:  5'- cGACGUCguccccGCCGcCGUccCCGUCGCCg -3'
miRNA:   3'- cCUGCAGaa----CGGCaGCA--GGCAGUGGg -5'
1636 3' -55.3 NC_001347.2 + 135541 0.73 0.763978
Target:  5'- gGGACcgaUUGCCGUCGagCCGgggcgUCGCCCg -3'
miRNA:   3'- -CCUGcagAACGGCAGCa-GGC-----AGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 229781 0.73 0.763978
Target:  5'- ---gGUCcccaggGCCGUCGUCCcUCGCCCc -3'
miRNA:   3'- ccugCAGaa----CGGCAGCAGGcAGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 302 0.73 0.763978
Target:  5'- ---gGUCcccaggGCCGUCGUCCcUCGCCCc -3'
miRNA:   3'- ccugCAGaa----CGGCAGCAGGcAGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 11827 0.73 0.772981
Target:  5'- -cGCGUCUgggGCCGUUGUUCGgaggACCCu -3'
miRNA:   3'- ccUGCAGAa--CGGCAGCAGGCag--UGGG- -5'
1636 3' -55.3 NC_001347.2 + 149120 0.71 0.84793
Target:  5'- cGGACGcCauacGCCGU-GUCUGUCACgCCg -3'
miRNA:   3'- -CCUGCaGaa--CGGCAgCAGGCAGUG-GG- -5'
1636 3' -55.3 NC_001347.2 + 25148 0.7 0.883643
Target:  5'- cGuCGUCgacGCCGUUGUCCacccucUCGCCCu -3'
miRNA:   3'- cCuGCAGaa-CGGCAGCAGGc-----AGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 27152 0.69 0.914293
Target:  5'- cGcCGUUUUGCUGuccUCGUCCGggucuaCGCCCu -3'
miRNA:   3'- cCuGCAGAACGGC---AGCAGGCa-----GUGGG- -5'
1636 3' -55.3 NC_001347.2 + 179945 0.69 0.919781
Target:  5'- uGGACGUaCUgGaccaCGUUGUCCGUCAUg- -3'
miRNA:   3'- -CCUGCA-GAaCg---GCAGCAGGCAGUGgg -5'
1636 3' -55.3 NC_001347.2 + 37063 0.69 0.925052
Target:  5'- cGGAgGUgCUggcgGCCGUgGcCUGUgGCCCg -3'
miRNA:   3'- -CCUgCA-GAa---CGGCAgCaGGCAgUGGG- -5'
1636 3' -55.3 NC_001347.2 + 201298 0.69 0.925052
Target:  5'- cGG-UGUUUUGCCGUCGuuuuuuuuuUCCGgaucgGCCCg -3'
miRNA:   3'- -CCuGCAGAACGGCAGC---------AGGCag---UGGG- -5'
1636 3' -55.3 NC_001347.2 + 67508 0.69 0.930104
Target:  5'- --cCGUCggUGCCGgcggccaCGUCCGUCACg- -3'
miRNA:   3'- ccuGCAGa-ACGGCa------GCAGGCAGUGgg -5'
1636 3' -55.3 NC_001347.2 + 85325 0.68 0.934938
Target:  5'- aGGugGUgaUcagcGCCGcCGccagcgCCGUCGCCCg -3'
miRNA:   3'- -CCugCAgaA----CGGCaGCa-----GGCAGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 24609 0.68 0.943954
Target:  5'- -cGCG-C-UGCCGUCGUCCGUU-CCg -3'
miRNA:   3'- ccUGCaGaACGGCAGCAGGCAGuGGg -5'
1636 3' -55.3 NC_001347.2 + 131724 0.68 0.952113
Target:  5'- cGACGaCcgGCCGUCG-CCGcCGCCg -3'
miRNA:   3'- cCUGCaGaaCGGCAGCaGGCaGUGGg -5'
1636 3' -55.3 NC_001347.2 + 85395 0.67 0.959434
Target:  5'- uGGCGUCcccgucGCUGUUGUC-GUCACUCa -3'
miRNA:   3'- cCUGCAGaa----CGGCAGCAGgCAGUGGG- -5'
1636 3' -55.3 NC_001347.2 + 78404 0.67 0.959434
Target:  5'- gGGccACGUCgggcUGCUGcCG-CCGcCACCCg -3'
miRNA:   3'- -CC--UGCAGa---ACGGCaGCaGGCaGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.