Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1636 | 3' | -55.3 | NC_001347.2 | + | 302 | 0.73 | 0.763978 |
Target: 5'- ---gGUCcccaggGCCGUCGUCCcUCGCCCc -3' miRNA: 3'- ccugCAGaa----CGGCAGCAGGcAGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 448 | 0.66 | 0.974275 |
Target: 5'- -cACGUCgcuuuuauucGCCGUCG-CCGUCcUCCg -3' miRNA: 3'- ccUGCAGaa--------CGGCAGCaGGCAGuGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 852 | 0.66 | 0.982938 |
Target: 5'- uGGACGUCgga--GgUGUCCGgCGCCCa -3' miRNA: 3'- -CCUGCAGaacggCaGCAGGCaGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 11827 | 0.73 | 0.772981 |
Target: 5'- -cGCGUCUgggGCCGUUGUUCGgaggACCCu -3' miRNA: 3'- ccUGCAGAa--CGGCAGCAGGCag--UGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 17123 | 0.77 | 0.562316 |
Target: 5'- cGGuCGUCc-GCCGUCGgCCGcCGCCCa -3' miRNA: 3'- -CCuGCAGaaCGGCAGCaGGCaGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 24489 | 0.66 | 0.974275 |
Target: 5'- cGGGCuuucCUUGUcaCGUUGUCUGggCGCCCg -3' miRNA: 3'- -CCUGca--GAACG--GCAGCAGGCa-GUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 24609 | 0.68 | 0.943954 |
Target: 5'- -cGCG-C-UGCCGUCGUCCGUU-CCg -3' miRNA: 3'- ccUGCaGaACGGCAGCAGGCAGuGGg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 25148 | 0.7 | 0.883643 |
Target: 5'- cGuCGUCgacGCCGUUGUCCacccucUCGCCCu -3' miRNA: 3'- cCuGCAGaa-CGGCAGCAGGc-----AGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 27152 | 0.69 | 0.914293 |
Target: 5'- cGcCGUUUUGCUGuccUCGUCCGggucuaCGCCCu -3' miRNA: 3'- cCuGCAGAACGGC---AGCAGGCa-----GUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 37063 | 0.69 | 0.925052 |
Target: 5'- cGGAgGUgCUggcgGCCGUgGcCUGUgGCCCg -3' miRNA: 3'- -CCUgCA-GAa---CGGCAgCaGGCAgUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 38433 | 0.73 | 0.736362 |
Target: 5'- cGACGUCguccccGCCGcCGUccCCGUCGCCg -3' miRNA: 3'- cCUGCAGaa----CGGCaGCA--GGCAGUGGg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 38658 | 0.67 | 0.968908 |
Target: 5'- cGGCGUCUgcagcgccaCCGUCGUgCCGgccCACCg -3' miRNA: 3'- cCUGCAGAac-------GGCAGCA-GGCa--GUGGg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 67508 | 0.69 | 0.930104 |
Target: 5'- --cCGUCggUGCCGgcggccaCGUCCGUCACg- -3' miRNA: 3'- ccuGCAGa-ACGGCa------GCAGGCAGUGgg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 69611 | 0.66 | 0.981015 |
Target: 5'- cGcCGcagCaUGCCGUCccaGUCCGcCGCCCa -3' miRNA: 3'- cCuGCa--GaACGGCAG---CAGGCaGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 76970 | 0.66 | 0.978935 |
Target: 5'- uGGAaGUCUUGCCGgCGcCCGccgUGCCg -3' miRNA: 3'- -CCUgCAGAACGGCaGCaGGCa--GUGGg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 78404 | 0.67 | 0.959434 |
Target: 5'- gGGccACGUCgggcUGCUGcCG-CCGcCACCCg -3' miRNA: 3'- -CC--UGCAGa---ACGGCaGCaGGCaGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 85325 | 0.68 | 0.934938 |
Target: 5'- aGGugGUgaUcagcGCCGcCGccagcgCCGUCGCCCg -3' miRNA: 3'- -CCugCAgaA----CGGCaGCa-----GGCAGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 85395 | 0.67 | 0.959434 |
Target: 5'- uGGCGUCcccgucGCUGUUGUC-GUCACUCa -3' miRNA: 3'- cCUGCAGaa----CGGCAGCAGgCAGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 97652 | 0.66 | 0.981803 |
Target: 5'- cGGcACGUCguacagcucgucccUGCUGUCGUC-GUCucCCCg -3' miRNA: 3'- -CC-UGCAGa-------------ACGGCAGCAGgCAGu-GGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 104536 | 0.66 | 0.982752 |
Target: 5'- cGGGCGUgccuccugcaugCUgGCCGUCGaUCCGUacgacacggaggcCGCCa -3' miRNA: 3'- -CCUGCA------------GAaCGGCAGC-AGGCA-------------GUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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