Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1636 | 3' | -55.3 | NC_001347.2 | + | 229927 | 0.66 | 0.974275 |
Target: 5'- -cACGUCgcuuuuauucGCCGUCG-CCGUCcUCCg -3' miRNA: 3'- ccUGCAGaa--------CGGCAGCaGGCAGuGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 229781 | 0.73 | 0.763978 |
Target: 5'- ---gGUCcccaggGCCGUCGUCCcUCGCCCc -3' miRNA: 3'- ccugCAGaa----CGGCAGCAGGcAGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 217068 | 0.67 | 0.962789 |
Target: 5'- cGACGcauauCCGUCGUUCGgCACCCu -3' miRNA: 3'- cCUGCagaacGGCAGCAGGCaGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 210145 | 0.67 | 0.968908 |
Target: 5'- cGcCGUCUuucgUGCCGUCG-CCGcacugcguucUCACUCg -3' miRNA: 3'- cCuGCAGA----ACGGCAGCaGGC----------AGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 201298 | 0.69 | 0.925052 |
Target: 5'- cGG-UGUUUUGCCGUCGuuuuuuuuuUCCGgaucgGCCCg -3' miRNA: 3'- -CCuGCAGAACGGCAGC---------AGGCag---UGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 193122 | 0.73 | 0.726037 |
Target: 5'- cGGCGUCUUccuccucGUCGUCGccgCCGUCGCgCCu -3' miRNA: 3'- cCUGCAGAA-------CGGCAGCa--GGCAGUG-GG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 191848 | 0.66 | 0.98471 |
Target: 5'- cGGugGU---GCCuGUCGUCCucGUCuCCCc -3' miRNA: 3'- -CCugCAgaaCGG-CAGCAGG--CAGuGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 184443 | 0.66 | 0.978935 |
Target: 5'- uGACGgagCUcGUCGUCGUCCuccUCuCCCu -3' miRNA: 3'- cCUGCa--GAaCGGCAGCAGGc--AGuGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 179945 | 0.69 | 0.919781 |
Target: 5'- uGGACGUaCUgGaccaCGUUGUCCGUCAUg- -3' miRNA: 3'- -CCUGCA-GAaCg---GCAGCAGGCAGUGgg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 172574 | 0.66 | 0.984539 |
Target: 5'- cGGGCGUCUUcgcagcguucccgGUCGUCGUgUGU-GCUCu -3' miRNA: 3'- -CCUGCAGAA-------------CGGCAGCAgGCAgUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 166620 | 0.66 | 0.981015 |
Target: 5'- --cCGUCacGCCGUCcUCCGagaggcgCGCCCg -3' miRNA: 3'- ccuGCAGaaCGGCAGcAGGCa------GUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 166017 | 0.67 | 0.965945 |
Target: 5'- cGGACGUCgcgccUGCCGUUGauucUUCGUgAUCg -3' miRNA: 3'- -CCUGCAGa----ACGGCAGC----AGGCAgUGGg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 165116 | 0.67 | 0.968908 |
Target: 5'- cGGugGUCguugucgcUGCCGU-GUCCG-CGCUUu -3' miRNA: 3'- -CCugCAGa-------ACGGCAgCAGGCaGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 164678 | 0.67 | 0.965945 |
Target: 5'- aGGACGgc--GCCGUgG-CCGUUGCCg -3' miRNA: 3'- -CCUGCagaaCGGCAgCaGGCAGUGGg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 161661 | 0.67 | 0.968908 |
Target: 5'- uGGACGc---GCCGUUGg-CGUCGCCUc -3' miRNA: 3'- -CCUGCagaaCGGCAGCagGCAGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 158177 | 0.66 | 0.976691 |
Target: 5'- uGGACGcgcgcucgCUggugGCCGUgGUCUGUCGgCa -3' miRNA: 3'- -CCUGCa-------GAa---CGGCAgCAGGCAGUgGg -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 156652 | 0.67 | 0.962789 |
Target: 5'- cGGGCcUCg-GCCGcCG-CCGcCACCCa -3' miRNA: 3'- -CCUGcAGaaCGGCaGCaGGCaGUGGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 152157 | 0.66 | 0.982938 |
Target: 5'- aGGcUGUaacuaacgUGCUGUCGcCCGUCuuuCCCg -3' miRNA: 3'- -CCuGCAga------ACGGCAGCaGGCAGu--GGG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 149120 | 0.71 | 0.84793 |
Target: 5'- cGGACGcCauacGCCGU-GUCUGUCACgCCg -3' miRNA: 3'- -CCUGCaGaa--CGGCAgCAGGCAGUG-GG- -5' |
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1636 | 3' | -55.3 | NC_001347.2 | + | 143685 | 0.67 | 0.962789 |
Target: 5'- uGGAgGUCUgcgcgcaguUGCUGgagcucUCCGUCGCCUa -3' miRNA: 3'- -CCUgCAGA---------ACGGCagc---AGGCAGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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