miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 5' -51.5 NC_001347.2 + 52060 0.66 0.998546
Target:  5'- uGGGACGAggaGGAGGaggcguccGCGGCCcgcgAGCGCa -3'
miRNA:   3'- cUCUUGCUa--CCUCC--------UGCUGG----UUGUGg -5'
1636 5' -51.5 NC_001347.2 + 193920 0.66 0.998546
Target:  5'- uGAGGGCGcc-GAGGACaaGACCuucuuuCACCg -3'
miRNA:   3'- -CUCUUGCuacCUCCUG--CUGGuu----GUGG- -5'
1636 5' -51.5 NC_001347.2 + 37668 0.66 0.998546
Target:  5'- -uGAGCGGUGGGGGcauCGuugCAGCGuCCg -3'
miRNA:   3'- cuCUUGCUACCUCCu--GCug-GUUGU-GG- -5'
1636 5' -51.5 NC_001347.2 + 207072 0.66 0.998262
Target:  5'- cAGAGUGAUGGcuGA-GACCAACACg -3'
miRNA:   3'- cUCUUGCUACCucCUgCUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 63063 0.66 0.998262
Target:  5'- -uGggUGgcGGAGGACuGCCGGCGg- -3'
miRNA:   3'- cuCuuGCuaCCUCCUGcUGGUUGUgg -5'
1636 5' -51.5 NC_001347.2 + 142335 0.66 0.998262
Target:  5'- gGAGAacuuGCGAcgcgUGcuGGACG-CCGACGCCc -3'
miRNA:   3'- -CUCU----UGCU----ACcuCCUGCuGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 196392 0.66 0.997933
Target:  5'- -cGAGCuGAggcUGGAGcGCaACCGACACCu -3'
miRNA:   3'- cuCUUG-CU---ACCUCcUGcUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 129967 0.66 0.997933
Target:  5'- cAGGACGGcu-GGGGCGACCAuuGCAgCa -3'
miRNA:   3'- cUCUUGCUaccUCCUGCUGGU--UGUgG- -5'
1636 5' -51.5 NC_001347.2 + 7963 0.66 0.997933
Target:  5'- --uGACGGUGGcGGcGGCaGACCAacauGCGCCg -3'
miRNA:   3'- cucUUGCUACC-UC-CUG-CUGGU----UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 96805 0.66 0.997553
Target:  5'- aGAGAGCcaccaGGUGcc-GGCGACUGACGCCg -3'
miRNA:   3'- -CUCUUG-----CUACcucCUGCUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 144774 0.66 0.997553
Target:  5'- cAGAAgGucucGGAGGugGGCUAugGCa -3'
miRNA:   3'- cUCUUgCua--CCUCCugCUGGUugUGg -5'
1636 5' -51.5 NC_001347.2 + 81732 0.66 0.997116
Target:  5'- cGAGcccACGAUGucGGGCaGGCC-GCACCa -3'
miRNA:   3'- -CUCu--UGCUACcuCCUG-CUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 164901 0.67 0.996049
Target:  5'- uGAGGGgGA-GGAGGA-GGCgGugGCCa -3'
miRNA:   3'- -CUCUUgCUaCCUCCUgCUGgUugUGG- -5'
1636 5' -51.5 NC_001347.2 + 189235 0.67 0.995405
Target:  5'- aAGAcaGCGA-GGAGGAagacgaCGACUccucgGACACCg -3'
miRNA:   3'- cUCU--UGCUaCCUCCU------GCUGG-----UUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 77941 0.67 0.994677
Target:  5'- cGGAGCGGcUGGAGGcgcagcugcGCGGCaAGCACa -3'
miRNA:   3'- cUCUUGCU-ACCUCC---------UGCUGgUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 190165 0.67 0.994677
Target:  5'- --cGGC-AUGGGGGGCG-CCAaaACGCCg -3'
miRNA:   3'- cucUUGcUACCUCCUGCuGGU--UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 66681 0.67 0.9946
Target:  5'- cGAGAG-GA-GGAGGACGACgacgaugCAGCcuGCCg -3'
miRNA:   3'- -CUCUUgCUaCCUCCUGCUG-------GUUG--UGG- -5'
1636 5' -51.5 NC_001347.2 + 66984 0.67 0.994198
Target:  5'- --uGACGAgUGGcGGACaugcggcugcuggggGGCCAACGCCg -3'
miRNA:   3'- cucUUGCU-ACCuCCUG---------------CUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 17088 0.67 0.99386
Target:  5'- aGAGGaagACGAaGGAaacGACGGCC-GCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCUc--CUGCUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 65727 0.67 0.99386
Target:  5'- --cGGCGGUGGAGGGCG-CgCGGCAa- -3'
miRNA:   3'- cucUUGCUACCUCCUGCuG-GUUGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.