miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 5' -51.5 NC_001347.2 + 132709 1.07 0.017343
Target:  5'- aGAGAACGAUGGAGGACGACCAACACg -3'
miRNA:   3'- -CUCUUGCUACCUCCUGCUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 136073 0.81 0.510211
Target:  5'- cAGGGCGGUGGGacgggcccgcGGACgGACCGGCGCCg -3'
miRNA:   3'- cUCUUGCUACCU----------CCUG-CUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 131710 0.79 0.630258
Target:  5'- uGAGGACGA-GGAGacGACGACCGGCcgucGCCg -3'
miRNA:   3'- -CUCUUGCUaCCUC--CUGCUGGUUG----UGG- -5'
1636 5' -51.5 NC_001347.2 + 103532 0.79 0.640439
Target:  5'- -cGAGCuGGUGGAGGACGucgccACCGACGCa -3'
miRNA:   3'- cuCUUG-CUACCUCCUGC-----UGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 80355 0.77 0.71106
Target:  5'- uGGaAGCGGUGGAGGACGACaauaacucucGCGCCc -3'
miRNA:   3'- cUC-UUGCUACCUCCUGCUGgu--------UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 159685 0.74 0.862954
Target:  5'- -cGAACG-UGGAGGGCGGuCgCAGCACg -3'
miRNA:   3'- cuCUUGCuACCUCCUGCU-G-GUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 135322 0.74 0.862954
Target:  5'- gGGGAGCGucacGGGACaGGCCAACGCCc -3'
miRNA:   3'- -CUCUUGCuaccUCCUG-CUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 158807 0.73 0.877611
Target:  5'- cGGGAcccACGGUGGccaacaagcGGGACGAaaAACACCg -3'
miRNA:   3'- -CUCU---UGCUACC---------UCCUGCUggUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 136200 0.73 0.910391
Target:  5'- cGGAcuGCGccGGGGGGCGGCgGGCACg -3'
miRNA:   3'- cUCU--UGCuaCCUCCUGCUGgUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 192998 0.72 0.925687
Target:  5'- -uGAGCGuGUGGAGGACGggguggagcgggucGCCGAgGCUa -3'
miRNA:   3'- cuCUUGC-UACCUCCUGC--------------UGGUUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 1722 0.71 0.950716
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 151192 0.71 0.958476
Target:  5'- uGGGAACGcgGGAGGGgGAUucggaggagagCAGCGCg -3'
miRNA:   3'- -CUCUUGCuaCCUCCUgCUG-----------GUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 130626 0.7 0.962022
Target:  5'- uGAGGGCGAgcUGGAagaGGACGAagacagugaCGACGCUa -3'
miRNA:   3'- -CUCUUGCU--ACCU---CCUGCUg--------GUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 82715 0.7 0.971388
Target:  5'- -cGggUGGUGGcGGugGugCAGCGgCg -3'
miRNA:   3'- cuCuuGCUACCuCCugCugGUUGUgG- -5'
1636 5' -51.5 NC_001347.2 + 78176 0.7 0.971388
Target:  5'- gGAG-AUGAUGGAGcagcACGACCGgggcagcgACGCCa -3'
miRNA:   3'- -CUCuUGCUACCUCc---UGCUGGU--------UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 37264 0.69 0.976627
Target:  5'- --uGGCGGcagcGGAGGugGGCCGGgGCCc -3'
miRNA:   3'- cucUUGCUa---CCUCCugCUGGUUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 1972 0.69 0.976627
Target:  5'- cGGGGACGgcGGcgGGGACGACguccCGCCa -3'
miRNA:   3'- -CUCUUGCuaCC--UCCUGCUGguu-GUGG- -5'
1636 5' -51.5 NC_001347.2 + 36467 0.69 0.978965
Target:  5'- cGGAGCGGaGGAGG-UGACCuGGCugCu -3'
miRNA:   3'- cUCUUGCUaCCUCCuGCUGG-UUGugG- -5'
1636 5' -51.5 NC_001347.2 + 40098 0.69 0.978965
Target:  5'- cGGGGGCGAgGGAcGACGGCCcugGGgACCg -3'
miRNA:   3'- -CUCUUGCUaCCUcCUGCUGG---UUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 135241 0.69 0.984943
Target:  5'- gGGGAGgGGagUGGGGGACcacgcccagGGCCAGCaaGCCg -3'
miRNA:   3'- -CUCUUgCU--ACCUCCUG---------CUGGUUG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.