miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 5' -51.5 NC_001347.2 + 21449 0.68 0.986615
Target:  5'- -cGAGCGGggacgGGAcGACGACCcacCGCCg -3'
miRNA:   3'- cuCUUGCUa----CCUcCUGCUGGuu-GUGG- -5'
1636 5' -51.5 NC_001347.2 + 140674 0.68 0.986615
Target:  5'- gGGGAAUGAUGGGGcGCGGCgGuCGCa -3'
miRNA:   3'- -CUCUUGCUACCUCcUGCUGgUuGUGg -5'
1636 5' -51.5 NC_001347.2 + 94376 0.68 0.986615
Target:  5'- uGGAGCGcgGcccguGGAuCGGCCAGCGCUg -3'
miRNA:   3'- cUCUUGCuaCcu---CCU-GCUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 152425 0.68 0.988141
Target:  5'- uGGGACGA-GGAGGAgGgGCCGcaGCCg -3'
miRNA:   3'- cUCUUGCUaCCUCCUgC-UGGUugUGG- -5'
1636 5' -51.5 NC_001347.2 + 29224 0.68 0.988713
Target:  5'- --aGACGcUGGAGGGCuacgcggaucgaguGCCGACGCCg -3'
miRNA:   3'- cucUUGCuACCUCCUGc-------------UGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 135689 0.68 0.989529
Target:  5'- gGGGAGCugGGUGGGGGAUccCCGGuCGCCc -3'
miRNA:   3'- -CUCUUG--CUACCUCCUGcuGGUU-GUGG- -5'
1636 5' -51.5 NC_001347.2 + 174329 0.68 0.989529
Target:  5'- aGGAACGcacgcUGGAGGACGcGCUGGCugUc -3'
miRNA:   3'- cUCUUGCu----ACCUCCUGC-UGGUUGugG- -5'
1636 5' -51.5 NC_001347.2 + 31464 0.68 0.990047
Target:  5'- uGAGGACGAcgacuacuauuacuaUagGGAGGACGAaccgcgaCAACACg -3'
miRNA:   3'- -CUCUUGCU---------------A--CCUCCUGCUg------GUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 164857 0.68 0.990787
Target:  5'- uAGGACGGUGGuaccgcGGACGAagaaGAgGCCg -3'
miRNA:   3'- cUCUUGCUACCu-----CCUGCUgg--UUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 197425 0.68 0.991922
Target:  5'- ---uGCGAcgUGGAGGA-GACCAuccuCACCc -3'
miRNA:   3'- cucuUGCU--ACCUCCUgCUGGUu---GUGG- -5'
1636 5' -51.5 NC_001347.2 + 47810 0.68 0.991922
Target:  5'- aGAGAcAUGAuuUGGGGGG-GACCGGCGgCg -3'
miRNA:   3'- -CUCU-UGCU--ACCUCCUgCUGGUUGUgG- -5'
1636 5' -51.5 NC_001347.2 + 159636 0.68 0.991922
Target:  5'- cGGGAA-GGUGG-GGAaggccuCGuCCAACACCa -3'
miRNA:   3'- -CUCUUgCUACCuCCU------GCuGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 100464 0.67 0.992944
Target:  5'- cGAGAACG-UGGuAGGACaGCgcGCGCCc -3'
miRNA:   3'- -CUCUUGCuACC-UCCUGcUGguUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 29259 0.67 0.992944
Target:  5'- ----nCGGUGGAGGACGucuCCGAaaGCCu -3'
miRNA:   3'- cucuuGCUACCUCCUGCu--GGUUg-UGG- -5'
1636 5' -51.5 NC_001347.2 + 88610 0.67 0.992944
Target:  5'- -uGAGCGgcGGcGGccugcGCGGCCuGCACCg -3'
miRNA:   3'- cuCUUGCuaCCuCC-----UGCUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 76162 0.67 0.992944
Target:  5'- cGAGGgguuGCgGAUGGAgcuGGGCGGCC-GCACg -3'
miRNA:   3'- -CUCU----UG-CUACCU---CCUGCUGGuUGUGg -5'
1636 5' -51.5 NC_001347.2 + 65727 0.67 0.99386
Target:  5'- --cGGCGGUGGAGGGCG-CgCGGCAa- -3'
miRNA:   3'- cucUUGCUACCUCCUGCuG-GUUGUgg -5'
1636 5' -51.5 NC_001347.2 + 148300 0.67 0.99386
Target:  5'- cAGAACGGuacagauucuuUGGAcGGACaGACUGGCACg -3'
miRNA:   3'- cUCUUGCU-----------ACCU-CCUG-CUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 17088 0.67 0.99386
Target:  5'- aGAGGaagACGAaGGAaacGACGGCC-GCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCUc--CUGCUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 66984 0.67 0.994198
Target:  5'- --uGACGAgUGGcGGACaugcggcugcuggggGGCCAACGCCg -3'
miRNA:   3'- cucUUGCU-ACCuCCUG---------------CUGGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.