miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 5' -51.5 NC_001347.2 + 1722 0.71 0.950716
Target:  5'- cGGGAgcuGCGccGGcGGugGGCCGGCACg -3'
miRNA:   3'- -CUCU---UGCuaCCuCCugCUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 1972 0.69 0.976627
Target:  5'- cGGGGACGgcGGcgGGGACGACguccCGCCa -3'
miRNA:   3'- -CUCUUGCuaCC--UCCUGCUGguu-GUGG- -5'
1636 5' -51.5 NC_001347.2 + 7963 0.66 0.997933
Target:  5'- --uGACGGUGGcGGcGGCaGACCAacauGCGCCg -3'
miRNA:   3'- cucUUGCUACC-UC-CUG-CUGGU----UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 17088 0.67 0.99386
Target:  5'- aGAGGaagACGAaGGAaacGACGGCC-GCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCUc--CUGCUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 21449 0.68 0.986615
Target:  5'- -cGAGCGGggacgGGAcGACGACCcacCGCCg -3'
miRNA:   3'- cuCUUGCUa----CCUcCUGCUGGuu-GUGG- -5'
1636 5' -51.5 NC_001347.2 + 29224 0.68 0.988713
Target:  5'- --aGACGcUGGAGGGCuacgcggaucgaguGCCGACGCCg -3'
miRNA:   3'- cucUUGCuACCUCCUGc-------------UGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 29259 0.67 0.992944
Target:  5'- ----nCGGUGGAGGACGucuCCGAaaGCCu -3'
miRNA:   3'- cucuuGCUACCUCCUGCu--GGUUg-UGG- -5'
1636 5' -51.5 NC_001347.2 + 31464 0.68 0.990047
Target:  5'- uGAGGACGAcgacuacuauuacuaUagGGAGGACGAaccgcgaCAACACg -3'
miRNA:   3'- -CUCUUGCU---------------A--CCUCCUGCUg------GUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 36467 0.69 0.978965
Target:  5'- cGGAGCGGaGGAGG-UGACCuGGCugCu -3'
miRNA:   3'- cUCUUGCUaCCUCCuGCUGG-UUGugG- -5'
1636 5' -51.5 NC_001347.2 + 37264 0.69 0.976627
Target:  5'- --uGGCGGcagcGGAGGugGGCCGGgGCCc -3'
miRNA:   3'- cucUUGCUa---CCUCCugCUGGUUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 37668 0.66 0.998546
Target:  5'- -uGAGCGGUGGGGGcauCGuugCAGCGuCCg -3'
miRNA:   3'- cuCUUGCUACCUCCu--GCug-GUUGU-GG- -5'
1636 5' -51.5 NC_001347.2 + 40098 0.69 0.978965
Target:  5'- cGGGGGCGAgGGAcGACGGCCcugGGgACCg -3'
miRNA:   3'- -CUCUUGCUaCCUcCUGCUGG---UUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 47810 0.68 0.991922
Target:  5'- aGAGAcAUGAuuUGGGGGG-GACCGGCGgCg -3'
miRNA:   3'- -CUCU-UGCU--ACCUCCUgCUGGUUGUgG- -5'
1636 5' -51.5 NC_001347.2 + 52060 0.66 0.998546
Target:  5'- uGGGACGAggaGGAGGaggcguccGCGGCCcgcgAGCGCa -3'
miRNA:   3'- cUCUUGCUa--CCUCC--------UGCUGG----UUGUGg -5'
1636 5' -51.5 NC_001347.2 + 63063 0.66 0.998262
Target:  5'- -uGggUGgcGGAGGACuGCCGGCGg- -3'
miRNA:   3'- cuCuuGCuaCCUCCUGcUGGUUGUgg -5'
1636 5' -51.5 NC_001347.2 + 65727 0.67 0.99386
Target:  5'- --cGGCGGUGGAGGGCG-CgCGGCAa- -3'
miRNA:   3'- cucUUGCUACCUCCUGCuG-GUUGUgg -5'
1636 5' -51.5 NC_001347.2 + 66681 0.67 0.9946
Target:  5'- cGAGAG-GA-GGAGGACGACgacgaugCAGCcuGCCg -3'
miRNA:   3'- -CUCUUgCUaCCUCCUGCUG-------GUUG--UGG- -5'
1636 5' -51.5 NC_001347.2 + 66984 0.67 0.994198
Target:  5'- --uGACGAgUGGcGGACaugcggcugcuggggGGCCAACGCCg -3'
miRNA:   3'- cucUUGCU-ACCuCCUG---------------CUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 76162 0.67 0.992944
Target:  5'- cGAGGgguuGCgGAUGGAgcuGGGCGGCC-GCACg -3'
miRNA:   3'- -CUCU----UG-CUACCU---CCUGCUGGuUGUGg -5'
1636 5' -51.5 NC_001347.2 + 77941 0.67 0.994677
Target:  5'- cGGAGCGGcUGGAGGcgcagcugcGCGGCaAGCACa -3'
miRNA:   3'- cUCUUGCU-ACCUCC---------UGCUGgUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.