miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 5' -51.5 NC_001347.2 + 78176 0.7 0.971388
Target:  5'- gGAG-AUGAUGGAGcagcACGACCGgggcagcgACGCCa -3'
miRNA:   3'- -CUCuUGCUACCUCc---UGCUGGU--------UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 80355 0.77 0.71106
Target:  5'- uGGaAGCGGUGGAGGACGACaauaacucucGCGCCc -3'
miRNA:   3'- cUC-UUGCUACCUCCUGCUGgu--------UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 81732 0.66 0.997116
Target:  5'- cGAGcccACGAUGucGGGCaGGCC-GCACCa -3'
miRNA:   3'- -CUCu--UGCUACcuCCUG-CUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 82715 0.7 0.971388
Target:  5'- -cGggUGGUGGcGGugGugCAGCGgCg -3'
miRNA:   3'- cuCuuGCUACCuCCugCugGUUGUgG- -5'
1636 5' -51.5 NC_001347.2 + 88610 0.67 0.992944
Target:  5'- -uGAGCGgcGGcGGccugcGCGGCCuGCACCg -3'
miRNA:   3'- cuCUUGCuaCCuCC-----UGCUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 94376 0.68 0.986615
Target:  5'- uGGAGCGcgGcccguGGAuCGGCCAGCGCUg -3'
miRNA:   3'- cUCUUGCuaCcu---CCU-GCUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 96805 0.66 0.997553
Target:  5'- aGAGAGCcaccaGGUGcc-GGCGACUGACGCCg -3'
miRNA:   3'- -CUCUUG-----CUACcucCUGCUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 100464 0.67 0.992944
Target:  5'- cGAGAACG-UGGuAGGACaGCgcGCGCCc -3'
miRNA:   3'- -CUCUUGCuACC-UCCUGcUGguUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 103532 0.79 0.640439
Target:  5'- -cGAGCuGGUGGAGGACGucgccACCGACGCa -3'
miRNA:   3'- cuCUUG-CUACCUCCUGC-----UGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 129967 0.66 0.997933
Target:  5'- cAGGACGGcu-GGGGCGACCAuuGCAgCa -3'
miRNA:   3'- cUCUUGCUaccUCCUGCUGGU--UGUgG- -5'
1636 5' -51.5 NC_001347.2 + 130626 0.7 0.962022
Target:  5'- uGAGGGCGAgcUGGAagaGGACGAagacagugaCGACGCUa -3'
miRNA:   3'- -CUCUUGCU--ACCU---CCUGCUg--------GUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 131710 0.79 0.630258
Target:  5'- uGAGGACGA-GGAGacGACGACCGGCcgucGCCg -3'
miRNA:   3'- -CUCUUGCUaCCUC--CUGCUGGUUG----UGG- -5'
1636 5' -51.5 NC_001347.2 + 132709 1.07 0.017343
Target:  5'- aGAGAACGAUGGAGGACGACCAACACg -3'
miRNA:   3'- -CUCUUGCUACCUCCUGCUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 135241 0.69 0.984943
Target:  5'- gGGGAGgGGagUGGGGGACcacgcccagGGCCAGCaaGCCg -3'
miRNA:   3'- -CUCUUgCU--ACCUCCUG---------CUGGUUG--UGG- -5'
1636 5' -51.5 NC_001347.2 + 135322 0.74 0.862954
Target:  5'- gGGGAGCGucacGGGACaGGCCAACGCCc -3'
miRNA:   3'- -CUCUUGCuaccUCCUG-CUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 135689 0.68 0.989529
Target:  5'- gGGGAGCugGGUGGGGGAUccCCGGuCGCCc -3'
miRNA:   3'- -CUCUUG--CUACCUCCUGcuGGUU-GUGG- -5'
1636 5' -51.5 NC_001347.2 + 136073 0.81 0.510211
Target:  5'- cAGGGCGGUGGGacgggcccgcGGACgGACCGGCGCCg -3'
miRNA:   3'- cUCUUGCUACCU----------CCUG-CUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 136200 0.73 0.910391
Target:  5'- cGGAcuGCGccGGGGGGCGGCgGGCACg -3'
miRNA:   3'- cUCU--UGCuaCCUCCUGCUGgUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 140674 0.68 0.986615
Target:  5'- gGGGAAUGAUGGGGcGCGGCgGuCGCa -3'
miRNA:   3'- -CUCUUGCUACCUCcUGCUGgUuGUGg -5'
1636 5' -51.5 NC_001347.2 + 142335 0.66 0.998262
Target:  5'- gGAGAacuuGCGAcgcgUGcuGGACG-CCGACGCCc -3'
miRNA:   3'- -CUCU----UGCU----ACcuCCUGCuGGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.