miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 5' -51.5 NC_001347.2 + 207072 0.66 0.998262
Target:  5'- cAGAGUGAUGGcuGA-GACCAACACg -3'
miRNA:   3'- cUCUUGCUACCucCUgCUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 197425 0.68 0.991922
Target:  5'- ---uGCGAcgUGGAGGA-GACCAuccuCACCc -3'
miRNA:   3'- cucuUGCU--ACCUCCUgCUGGUu---GUGG- -5'
1636 5' -51.5 NC_001347.2 + 196392 0.66 0.997933
Target:  5'- -cGAGCuGAggcUGGAGcGCaACCGACACCu -3'
miRNA:   3'- cuCUUG-CU---ACCUCcUGcUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 193920 0.66 0.998546
Target:  5'- uGAGGGCGcc-GAGGACaaGACCuucuuuCACCg -3'
miRNA:   3'- -CUCUUGCuacCUCCUG--CUGGuu----GUGG- -5'
1636 5' -51.5 NC_001347.2 + 192998 0.72 0.925687
Target:  5'- -uGAGCGuGUGGAGGACGggguggagcgggucGCCGAgGCUa -3'
miRNA:   3'- cuCUUGC-UACCUCCUGC--------------UGGUUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 190165 0.67 0.994677
Target:  5'- --cGGC-AUGGGGGGCG-CCAaaACGCCg -3'
miRNA:   3'- cucUUGcUACCUCCUGCuGGU--UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 189235 0.67 0.995405
Target:  5'- aAGAcaGCGA-GGAGGAagacgaCGACUccucgGACACCg -3'
miRNA:   3'- cUCU--UGCUaCCUCCU------GCUGG-----UUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 174329 0.68 0.989529
Target:  5'- aGGAACGcacgcUGGAGGACGcGCUGGCugUc -3'
miRNA:   3'- cUCUUGCu----ACCUCCUGC-UGGUUGugG- -5'
1636 5' -51.5 NC_001347.2 + 164901 0.67 0.996049
Target:  5'- uGAGGGgGA-GGAGGA-GGCgGugGCCa -3'
miRNA:   3'- -CUCUUgCUaCCUCCUgCUGgUugUGG- -5'
1636 5' -51.5 NC_001347.2 + 164857 0.68 0.990787
Target:  5'- uAGGACGGUGGuaccgcGGACGAagaaGAgGCCg -3'
miRNA:   3'- cUCUUGCUACCu-----CCUGCUgg--UUgUGG- -5'
1636 5' -51.5 NC_001347.2 + 159685 0.74 0.862954
Target:  5'- -cGAACG-UGGAGGGCGGuCgCAGCACg -3'
miRNA:   3'- cuCUUGCuACCUCCUGCU-G-GUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 159636 0.68 0.991922
Target:  5'- cGGGAA-GGUGG-GGAaggccuCGuCCAACACCa -3'
miRNA:   3'- -CUCUUgCUACCuCCU------GCuGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 158807 0.73 0.877611
Target:  5'- cGGGAcccACGGUGGccaacaagcGGGACGAaaAACACCg -3'
miRNA:   3'- -CUCU---UGCUACC---------UCCUGCUggUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 152425 0.68 0.988141
Target:  5'- uGGGACGA-GGAGGAgGgGCCGcaGCCg -3'
miRNA:   3'- cUCUUGCUaCCUCCUgC-UGGUugUGG- -5'
1636 5' -51.5 NC_001347.2 + 151192 0.71 0.958476
Target:  5'- uGGGAACGcgGGAGGGgGAUucggaggagagCAGCGCg -3'
miRNA:   3'- -CUCUUGCuaCCUCCUgCUG-----------GUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 148300 0.67 0.99386
Target:  5'- cAGAACGGuacagauucuuUGGAcGGACaGACUGGCACg -3'
miRNA:   3'- cUCUUGCU-----------ACCU-CCUG-CUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 144774 0.66 0.997553
Target:  5'- cAGAAgGucucGGAGGugGGCUAugGCa -3'
miRNA:   3'- cUCUUgCua--CCUCCugCUGGUugUGg -5'
1636 5' -51.5 NC_001347.2 + 142335 0.66 0.998262
Target:  5'- gGAGAacuuGCGAcgcgUGcuGGACG-CCGACGCCc -3'
miRNA:   3'- -CUCU----UGCU----ACcuCCUGCuGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 140674 0.68 0.986615
Target:  5'- gGGGAAUGAUGGGGcGCGGCgGuCGCa -3'
miRNA:   3'- -CUCUUGCUACCUCcUGCUGgUuGUGg -5'
1636 5' -51.5 NC_001347.2 + 136200 0.73 0.910391
Target:  5'- cGGAcuGCGccGGGGGGCGGCgGGCACg -3'
miRNA:   3'- cUCU--UGCuaCCUCCUGCUGgUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.