miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1636 5' -51.5 NC_001347.2 + 142335 0.66 0.998262
Target:  5'- gGAGAacuuGCGAcgcgUGcuGGACG-CCGACGCCc -3'
miRNA:   3'- -CUCU----UGCU----ACcuCCUGCuGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 193920 0.66 0.998546
Target:  5'- uGAGGGCGcc-GAGGACaaGACCuucuuuCACCg -3'
miRNA:   3'- -CUCUUGCuacCUCCUG--CUGGuu----GUGG- -5'
1636 5' -51.5 NC_001347.2 + 66681 0.67 0.9946
Target:  5'- cGAGAG-GA-GGAGGACGACgacgaugCAGCcuGCCg -3'
miRNA:   3'- -CUCUUgCUaCCUCCUGCUG-------GUUG--UGG- -5'
1636 5' -51.5 NC_001347.2 + 190165 0.67 0.994677
Target:  5'- --cGGC-AUGGGGGGCG-CCAaaACGCCg -3'
miRNA:   3'- cucUUGcUACCUCCUGCuGGU--UGUGG- -5'
1636 5' -51.5 NC_001347.2 + 47810 0.68 0.991922
Target:  5'- aGAGAcAUGAuuUGGGGGG-GACCGGCGgCg -3'
miRNA:   3'- -CUCU-UGCU--ACCUCCUgCUGGUUGUgG- -5'
1636 5' -51.5 NC_001347.2 + 159636 0.68 0.991922
Target:  5'- cGGGAA-GGUGG-GGAaggccuCGuCCAACACCa -3'
miRNA:   3'- -CUCUUgCUACCuCCU------GCuGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 88610 0.67 0.992944
Target:  5'- -uGAGCGgcGGcGGccugcGCGGCCuGCACCg -3'
miRNA:   3'- cuCUUGCuaCCuCC-----UGCUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 29259 0.67 0.992944
Target:  5'- ----nCGGUGGAGGACGucuCCGAaaGCCu -3'
miRNA:   3'- cucuuGCUACCUCCUGCu--GGUUg-UGG- -5'
1636 5' -51.5 NC_001347.2 + 76162 0.67 0.992944
Target:  5'- cGAGGgguuGCgGAUGGAgcuGGGCGGCC-GCACg -3'
miRNA:   3'- -CUCU----UG-CUACCU---CCUGCUGGuUGUGg -5'
1636 5' -51.5 NC_001347.2 + 148300 0.67 0.99386
Target:  5'- cAGAACGGuacagauucuuUGGAcGGACaGACUGGCACg -3'
miRNA:   3'- cUCUUGCU-----------ACCU-CCUG-CUGGUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 65727 0.67 0.99386
Target:  5'- --cGGCGGUGGAGGGCG-CgCGGCAa- -3'
miRNA:   3'- cucUUGCUACCUCCUGCuG-GUUGUgg -5'
1636 5' -51.5 NC_001347.2 + 100464 0.67 0.992944
Target:  5'- cGAGAACG-UGGuAGGACaGCgcGCGCCc -3'
miRNA:   3'- -CUCUUGCuACC-UCCUGcUGguUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 17088 0.67 0.99386
Target:  5'- aGAGGaagACGAaGGAaacGACGGCC-GCGCCa -3'
miRNA:   3'- -CUCU---UGCUaCCUc--CUGCUGGuUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 66984 0.67 0.994198
Target:  5'- --uGACGAgUGGcGGACaugcggcugcuggggGGCCAACGCCg -3'
miRNA:   3'- cucUUGCU-ACCuCCUG---------------CUGGUUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 189235 0.67 0.995405
Target:  5'- aAGAcaGCGA-GGAGGAagacgaCGACUccucgGACACCg -3'
miRNA:   3'- cUCU--UGCUaCCUCCU------GCUGG-----UUGUGG- -5'
1636 5' -51.5 NC_001347.2 + 77941 0.67 0.994677
Target:  5'- cGGAGCGGcUGGAGGcgcagcugcGCGGCaAGCACa -3'
miRNA:   3'- cUCUUGCU-ACCUCC---------UGCUGgUUGUGg -5'
1636 5' -51.5 NC_001347.2 + 52060 0.66 0.998546
Target:  5'- uGGGACGAggaGGAGGaggcguccGCGGCCcgcgAGCGCa -3'
miRNA:   3'- cUCUUGCUa--CCUCC--------UGCUGG----UUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.