Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16360 | 5' | -55.1 | NC_004084.1 | + | 55024 | 0.66 | 0.781443 |
Target: 5'- uGCGUCUCGuu---GUgCUCGAGGAGc -3' miRNA: 3'- -CGUAGAGCugcucCAgGAGCUCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 33176 | 0.66 | 0.771534 |
Target: 5'- cGCgAUCUCGACGAGcUCCugaagUCGuacuGGGAGc -3' miRNA: 3'- -CG-UAGAGCUGCUCcAGG-----AGC----UCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 49780 | 0.66 | 0.770536 |
Target: 5'- gGCAUCgcgauuacggagUCGACGGccagaucGG-CCUCGAGGAc- -3' miRNA: 3'- -CGUAG------------AGCUGCU-------CCaGGAGCUCCUca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 6911 | 0.66 | 0.761485 |
Target: 5'- cCGUCUCGACGAGcUCCcacucuuggUGAaGGAGUc -3' miRNA: 3'- cGUAGAGCUGCUCcAGGa--------GCU-CCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 24133 | 0.66 | 0.751306 |
Target: 5'- gGCGUCUCcgGGCGcaAGGacuaUCCUCGAagagGGAGg -3' miRNA: 3'- -CGUAGAG--CUGC--UCC----AGGAGCU----CCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 23250 | 0.66 | 0.751306 |
Target: 5'- gGCGUCgaCGACaAGGUCCUCuuuGGGAuGUa -3' miRNA: 3'- -CGUAGa-GCUGcUCCAGGAGc--UCCU-CA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 8606 | 0.66 | 0.751306 |
Target: 5'- ---aCUCGuCGAGGcugUCCUCGAGGc-- -3' miRNA: 3'- cguaGAGCuGCUCC---AGGAGCUCCuca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 49401 | 0.66 | 0.751306 |
Target: 5'- cGUAg-UCGuCGuGGUCCUCGAaccaGGAGUc -3' miRNA: 3'- -CGUagAGCuGCuCCAGGAGCU----CCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 8989 | 0.66 | 0.730603 |
Target: 5'- gGCAgcuacgagUUCGACGAGGacUCCugguUCGAGGAc- -3' miRNA: 3'- -CGUa-------GAGCUGCUCC--AGG----AGCUCCUca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 22878 | 0.67 | 0.709515 |
Target: 5'- gGCA-CUCGccgcCGAGGUCCUCGAucacgcgcaGGAu- -3' miRNA: 3'- -CGUaGAGCu---GCUCCAGGAGCU---------CCUca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 15404 | 0.67 | 0.709515 |
Target: 5'- uGCGUCUCGuuGGGGaacUCCUCGAucgcgucGAGUu -3' miRNA: 3'- -CGUAGAGCugCUCC---AGGAGCUc------CUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 49735 | 0.67 | 0.698854 |
Target: 5'- -gGUCUCcucuuCGAGGUgCUCGAGuGGGUc -3' miRNA: 3'- cgUAGAGcu---GCUCCAgGAGCUC-CUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 14675 | 0.67 | 0.688129 |
Target: 5'- aGCGUCcCGGCcGGGUCCUCGAuuGGc-- -3' miRNA: 3'- -CGUAGaGCUGcUCCAGGAGCU--CCuca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 53723 | 0.67 | 0.688129 |
Target: 5'- -gAUCUCGuCGGcucGGUCCUCGAcGAGc -3' miRNA: 3'- cgUAGAGCuGCU---CCAGGAGCUcCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 39577 | 0.67 | 0.688129 |
Target: 5'- aGCAgcUCgUCGACGAGGUCC-CGGGc--- -3' miRNA: 3'- -CGU--AG-AGCUGCUCCAGGaGCUCcuca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 16950 | 0.68 | 0.666533 |
Target: 5'- gGCGUCgCGACGucGGGUCUUCGAGc--- -3' miRNA: 3'- -CGUAGaGCUGC--UCCAGGAGCUCcuca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 21110 | 0.68 | 0.64481 |
Target: 5'- aGCGUCgUCGAUGAGGUcgaacguggCCUCccaGAGGAcGUc -3' miRNA: 3'- -CGUAG-AGCUGCUCCA---------GGAG---CUCCU-CA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 30903 | 0.68 | 0.633927 |
Target: 5'- cGCgAUCUCcccgGAgGAGGUCCUCGAGu--- -3' miRNA: 3'- -CG-UAGAG----CUgCUCCAGGAGCUCcuca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 35134 | 0.68 | 0.633927 |
Target: 5'- -gAUCcugggCGuCGAGGUCCUCGGGGu-- -3' miRNA: 3'- cgUAGa----GCuGCUCCAGGAGCUCCuca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 5372 | 0.68 | 0.633927 |
Target: 5'- -gAUCUCGACGucgaaccugGGcGUCCacagcaguuUCGAGGAGUc -3' miRNA: 3'- cgUAGAGCUGC---------UC-CAGG---------AGCUCCUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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