miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16360 5' -55.1 NC_004084.1 + 5003 1.09 0.001368
Target:  5'- gGCAUCUCGACGAGGUCCUCGAGGAGUu -3'
miRNA:   3'- -CGUAGAGCUGCUCCAGGAGCUCCUCA- -5'
16360 5' -55.1 NC_004084.1 + 41608 0.85 0.062108
Target:  5'- cCAUCUCGAUG-GGUCCUCGAGGAa- -3'
miRNA:   3'- cGUAGAGCUGCuCCAGGAGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 6019 0.83 0.080281
Target:  5'- uGCAgccgaaCUCGAguucaaCGAGGUCCUCGAGGAGg -3'
miRNA:   3'- -CGUa-----GAGCU------GCUCCAGGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 50685 0.78 0.188952
Target:  5'- aGCAgCUCGccaGCGAGGcgaaggacgUCCUCGAGGGGUa -3'
miRNA:   3'- -CGUaGAGC---UGCUCC---------AGGAGCUCCUCA- -5'
16360 5' -55.1 NC_004084.1 + 1611 0.75 0.292727
Target:  5'- aGCucugCUCGAUGAacUCCUCGAGGAGg -3'
miRNA:   3'- -CGua--GAGCUGCUccAGGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 41784 0.73 0.377453
Target:  5'- aCGUCgaCGACGAGGgcgucacgaucgaCCUCGAGGAGc -3'
miRNA:   3'- cGUAGa-GCUGCUCCa------------GGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 5720 0.72 0.398794
Target:  5'- cGUcgCUCGGgcCGAGGUCCUCGAucgGGAu- -3'
miRNA:   3'- -CGuaGAGCU--GCUCCAGGAGCU---CCUca -5'
16360 5' -55.1 NC_004084.1 + 55355 0.71 0.445646
Target:  5'- aGCGgcccgUCGACGAGuUCCUCGAGG-GUg -3'
miRNA:   3'- -CGUag---AGCUGCUCcAGGAGCUCCuCA- -5'
16360 5' -55.1 NC_004084.1 + 27630 0.71 0.445646
Target:  5'- aGCGUCUCGcgcuggaucGCGuacgCCUCGAGGAGg -3'
miRNA:   3'- -CGUAGAGC---------UGCuccaGGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 49025 0.71 0.475189
Target:  5'- cGCGUCgacgUGAUGGGGaugCC-CGAGGAGg -3'
miRNA:   3'- -CGUAGa---GCUGCUCCa--GGaGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 40574 0.71 0.486265
Target:  5'- uGCGgg-CGACGAGGUCaccaucgaacucggCGAGGAGUu -3'
miRNA:   3'- -CGUagaGCUGCUCCAGga------------GCUCCUCA- -5'
16360 5' -55.1 NC_004084.1 + 11396 0.7 0.495418
Target:  5'- gGCAUCgucaUCGaucGCGAcGUCCUCGAGGAa- -3'
miRNA:   3'- -CGUAG----AGC---UGCUcCAGGAGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 42986 0.7 0.536974
Target:  5'- aGCGcCUCGAUGAGGaacUCgacgcgaUCGAGGAGUu -3'
miRNA:   3'- -CGUaGAGCUGCUCC---AGg------AGCUCCUCA- -5'
16360 5' -55.1 NC_004084.1 + 50250 0.69 0.594801
Target:  5'- uGCGUCcucgucgccguuggCGGCGAGGUCCUCGAc---- -3'
miRNA:   3'- -CGUAGa-------------GCUGCUCCAGGAGCUccuca -5'
16360 5' -55.1 NC_004084.1 + 811 0.69 0.601306
Target:  5'- gGCga-UCGugGAGGUCCUCGucGAu- -3'
miRNA:   3'- -CGuagAGCugCUCCAGGAGCucCUca -5'
16360 5' -55.1 NC_004084.1 + 9826 0.68 0.612166
Target:  5'- aCAUCUCGAuccagcacuaCGAGGUCggCGAGGGc- -3'
miRNA:   3'- cGUAGAGCU----------GCUCCAGgaGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 3723 0.68 0.619778
Target:  5'- aGCGUaUgGACGAGcGcggcuucguucagcUCCUCGAGGAGa -3'
miRNA:   3'- -CGUAgAgCUGCUC-C--------------AGGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 9864 0.68 0.623043
Target:  5'- cGCcUCgaccgCGACGAGGUUCUUGAacccugcccgGGAGa -3'
miRNA:   3'- -CGuAGa----GCUGCUCCAGGAGCU----------CCUCa -5'
16360 5' -55.1 NC_004084.1 + 39514 0.68 0.623043
Target:  5'- aCGUCaUCGuucGCGAcGUCCUCGAGGAu- -3'
miRNA:   3'- cGUAG-AGC---UGCUcCAGGAGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 41386 0.68 0.623043
Target:  5'- --cUCUCGAuCGAGGUagagggCGAGGAGg -3'
miRNA:   3'- cguAGAGCU-GCUCCAgga---GCUCCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.