miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16360 5' -55.1 NC_004084.1 + 811 0.69 0.601306
Target:  5'- gGCga-UCGugGAGGUCCUCGucGAu- -3'
miRNA:   3'- -CGuagAGCugCUCCAGGAGCucCUca -5'
16360 5' -55.1 NC_004084.1 + 1611 0.75 0.292727
Target:  5'- aGCucugCUCGAUGAacUCCUCGAGGAGg -3'
miRNA:   3'- -CGua--GAGCUGCUccAGGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 3723 0.68 0.619778
Target:  5'- aGCGUaUgGACGAGcGcggcuucguucagcUCCUCGAGGAGa -3'
miRNA:   3'- -CGUAgAgCUGCUC-C--------------AGGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 5003 1.09 0.001368
Target:  5'- gGCAUCUCGACGAGGUCCUCGAGGAGUu -3'
miRNA:   3'- -CGUAGAGCUGCUCCAGGAGCUCCUCA- -5'
16360 5' -55.1 NC_004084.1 + 5372 0.68 0.633927
Target:  5'- -gAUCUCGACGucgaaccugGGcGUCCacagcaguuUCGAGGAGUc -3'
miRNA:   3'- cgUAGAGCUGC---------UC-CAGG---------AGCUCCUCA- -5'
16360 5' -55.1 NC_004084.1 + 5720 0.72 0.398794
Target:  5'- cGUcgCUCGGgcCGAGGUCCUCGAucgGGAu- -3'
miRNA:   3'- -CGuaGAGCU--GCUCCAGGAGCU---CCUca -5'
16360 5' -55.1 NC_004084.1 + 6019 0.83 0.080281
Target:  5'- uGCAgccgaaCUCGAguucaaCGAGGUCCUCGAGGAGg -3'
miRNA:   3'- -CGUa-----GAGCU------GCUCCAGGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 6911 0.66 0.761485
Target:  5'- cCGUCUCGACGAGcUCCcacucuuggUGAaGGAGUc -3'
miRNA:   3'- cGUAGAGCUGCUCcAGGa--------GCU-CCUCA- -5'
16360 5' -55.1 NC_004084.1 + 8606 0.66 0.751306
Target:  5'- ---aCUCGuCGAGGcugUCCUCGAGGc-- -3'
miRNA:   3'- cguaGAGCuGCUCC---AGGAGCUCCuca -5'
16360 5' -55.1 NC_004084.1 + 8989 0.66 0.730603
Target:  5'- gGCAgcuacgagUUCGACGAGGacUCCugguUCGAGGAc- -3'
miRNA:   3'- -CGUa-------GAGCUGCUCC--AGG----AGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 9826 0.68 0.612166
Target:  5'- aCAUCUCGAuccagcacuaCGAGGUCggCGAGGGc- -3'
miRNA:   3'- cGUAGAGCU----------GCUCCAGgaGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 9864 0.68 0.623043
Target:  5'- cGCcUCgaccgCGACGAGGUUCUUGAacccugcccgGGAGa -3'
miRNA:   3'- -CGuAGa----GCUGCUCCAGGAGCU----------CCUCa -5'
16360 5' -55.1 NC_004084.1 + 11396 0.7 0.495418
Target:  5'- gGCAUCgucaUCGaucGCGAcGUCCUCGAGGAa- -3'
miRNA:   3'- -CGUAG----AGC---UGCUcCAGGAGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 14675 0.67 0.688129
Target:  5'- aGCGUCcCGGCcGGGUCCUCGAuuGGc-- -3'
miRNA:   3'- -CGUAGaGCUGcUCCAGGAGCU--CCuca -5'
16360 5' -55.1 NC_004084.1 + 15404 0.67 0.709515
Target:  5'- uGCGUCUCGuuGGGGaacUCCUCGAucgcgucGAGUu -3'
miRNA:   3'- -CGUAGAGCugCUCC---AGGAGCUc------CUCA- -5'
16360 5' -55.1 NC_004084.1 + 16950 0.68 0.666533
Target:  5'- gGCGUCgCGACGucGGGUCUUCGAGc--- -3'
miRNA:   3'- -CGUAGaGCUGC--UCCAGGAGCUCcuca -5'
16360 5' -55.1 NC_004084.1 + 18887 0.68 0.633927
Target:  5'- cCAUCaCGAgGAGaUCCUCGAGGAcGUc -3'
miRNA:   3'- cGUAGaGCUgCUCcAGGAGCUCCU-CA- -5'
16360 5' -55.1 NC_004084.1 + 21110 0.68 0.64481
Target:  5'- aGCGUCgUCGAUGAGGUcgaacguggCCUCccaGAGGAcGUc -3'
miRNA:   3'- -CGUAG-AGCUGCUCCA---------GGAG---CUCCU-CA- -5'
16360 5' -55.1 NC_004084.1 + 22878 0.67 0.709515
Target:  5'- gGCA-CUCGccgcCGAGGUCCUCGAucacgcgcaGGAu- -3'
miRNA:   3'- -CGUaGAGCu---GCUCCAGGAGCU---------CCUca -5'
16360 5' -55.1 NC_004084.1 + 23250 0.66 0.751306
Target:  5'- gGCGUCgaCGACaAGGUCCUCuuuGGGAuGUa -3'
miRNA:   3'- -CGUAGa-GCUGcUCCAGGAGc--UCCU-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.