Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16360 | 5' | -55.1 | NC_004084.1 | + | 6019 | 0.83 | 0.080281 |
Target: 5'- uGCAgccgaaCUCGAguucaaCGAGGUCCUCGAGGAGg -3' miRNA: 3'- -CGUa-----GAGCU------GCUCCAGGAGCUCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 49780 | 0.66 | 0.770536 |
Target: 5'- gGCAUCgcgauuacggagUCGACGGccagaucGG-CCUCGAGGAc- -3' miRNA: 3'- -CGUAG------------AGCUGCU-------CCaGGAGCUCCUca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 23250 | 0.66 | 0.751306 |
Target: 5'- gGCGUCgaCGACaAGGUCCUCuuuGGGAuGUa -3' miRNA: 3'- -CGUAGa-GCUGcUCCAGGAGc--UCCU-CA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 24133 | 0.66 | 0.751306 |
Target: 5'- gGCGUCUCcgGGCGcaAGGacuaUCCUCGAagagGGAGg -3' miRNA: 3'- -CGUAGAG--CUGC--UCC----AGGAGCU----CCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 8989 | 0.66 | 0.730603 |
Target: 5'- gGCAgcuacgagUUCGACGAGGacUCCugguUCGAGGAc- -3' miRNA: 3'- -CGUa-------GAGCUGCUCC--AGG----AGCUCCUca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 5372 | 0.68 | 0.633927 |
Target: 5'- -gAUCUCGACGucgaaccugGGcGUCCacagcaguuUCGAGGAGUc -3' miRNA: 3'- cgUAGAGCUGC---------UC-CAGG---------AGCUCCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 30903 | 0.68 | 0.633927 |
Target: 5'- cGCgAUCUCcccgGAgGAGGUCCUCGAGu--- -3' miRNA: 3'- -CG-UAGAG----CUgCUCCAGGAGCUCcuca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 39514 | 0.68 | 0.623043 |
Target: 5'- aCGUCaUCGuucGCGAcGUCCUCGAGGAu- -3' miRNA: 3'- cGUAG-AGC---UGCUcCAGGAGCUCCUca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 41386 | 0.68 | 0.623043 |
Target: 5'- --cUCUCGAuCGAGGUagagggCGAGGAGg -3' miRNA: 3'- cguAGAGCU-GCUCCAgga---GCUCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 3723 | 0.68 | 0.619778 |
Target: 5'- aGCGUaUgGACGAGcGcggcuucguucagcUCCUCGAGGAGa -3' miRNA: 3'- -CGUAgAgCUGCUC-C--------------AGGAGCUCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 50685 | 0.78 | 0.188952 |
Target: 5'- aGCAgCUCGccaGCGAGGcgaaggacgUCCUCGAGGGGUa -3' miRNA: 3'- -CGUaGAGC---UGCUCC---------AGGAGCUCCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 41784 | 0.73 | 0.377453 |
Target: 5'- aCGUCgaCGACGAGGgcgucacgaucgaCCUCGAGGAGc -3' miRNA: 3'- cGUAGa-GCUGCUCCa------------GGAGCUCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 49025 | 0.71 | 0.475189 |
Target: 5'- cGCGUCgacgUGAUGGGGaugCC-CGAGGAGg -3' miRNA: 3'- -CGUAGa---GCUGCUCCa--GGaGCUCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 40574 | 0.71 | 0.486265 |
Target: 5'- uGCGgg-CGACGAGGUCaccaucgaacucggCGAGGAGUu -3' miRNA: 3'- -CGUagaGCUGCUCCAGga------------GCUCCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 42986 | 0.7 | 0.536974 |
Target: 5'- aGCGcCUCGAUGAGGaacUCgacgcgaUCGAGGAGUu -3' miRNA: 3'- -CGUaGAGCUGCUCC---AGg------AGCUCCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 9826 | 0.68 | 0.612166 |
Target: 5'- aCAUCUCGAuccagcacuaCGAGGUCggCGAGGGc- -3' miRNA: 3'- cGUAGAGCU----------GCUCCAGgaGCUCCUca -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 5003 | 1.09 | 0.001368 |
Target: 5'- gGCAUCUCGACGAGGUCCUCGAGGAGUu -3' miRNA: 3'- -CGUAGAGCUGCUCCAGGAGCUCCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 33176 | 0.66 | 0.771534 |
Target: 5'- cGCgAUCUCGACGAGcUCCugaagUCGuacuGGGAGc -3' miRNA: 3'- -CG-UAGAGCUGCUCcAGG-----AGC----UCCUCa -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 6911 | 0.66 | 0.761485 |
Target: 5'- cCGUCUCGACGAGcUCCcacucuuggUGAaGGAGUc -3' miRNA: 3'- cGUAGAGCUGCUCcAGGa--------GCU-CCUCA- -5' |
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16360 | 5' | -55.1 | NC_004084.1 | + | 49401 | 0.66 | 0.751306 |
Target: 5'- cGUAg-UCGuCGuGGUCCUCGAaccaGGAGUc -3' miRNA: 3'- -CGUagAGCuGCuCCAGGAGCU----CCUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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