miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16360 5' -55.1 NC_004084.1 + 22878 0.67 0.709515
Target:  5'- gGCA-CUCGccgcCGAGGUCCUCGAucacgcgcaGGAu- -3'
miRNA:   3'- -CGUaGAGCu---GCUCCAGGAGCU---------CCUca -5'
16360 5' -55.1 NC_004084.1 + 50250 0.69 0.594801
Target:  5'- uGCGUCcucgucgccguuggCGGCGAGGUCCUCGAc---- -3'
miRNA:   3'- -CGUAGa-------------GCUGCUCCAGGAGCUccuca -5'
16360 5' -55.1 NC_004084.1 + 55355 0.71 0.445646
Target:  5'- aGCGgcccgUCGACGAGuUCCUCGAGG-GUg -3'
miRNA:   3'- -CGUag---AGCUGCUCcAGGAGCUCCuCA- -5'
16360 5' -55.1 NC_004084.1 + 5003 1.09 0.001368
Target:  5'- gGCAUCUCGACGAGGUCCUCGAGGAGUu -3'
miRNA:   3'- -CGUAGAGCUGCUCCAGGAGCUCCUCA- -5'
16360 5' -55.1 NC_004084.1 + 39577 0.67 0.688129
Target:  5'- aGCAgcUCgUCGACGAGGUCC-CGGGc--- -3'
miRNA:   3'- -CGU--AG-AGCUGCUCCAGGaGCUCcuca -5'
16360 5' -55.1 NC_004084.1 + 55024 0.66 0.781443
Target:  5'- uGCGUCUCGuu---GUgCUCGAGGAGc -3'
miRNA:   3'- -CGUAGAGCugcucCAgGAGCUCCUCa -5'
16360 5' -55.1 NC_004084.1 + 33176 0.66 0.771534
Target:  5'- cGCgAUCUCGACGAGcUCCugaagUCGuacuGGGAGc -3'
miRNA:   3'- -CG-UAGAGCUGCUCcAGG-----AGC----UCCUCa -5'
16360 5' -55.1 NC_004084.1 + 6911 0.66 0.761485
Target:  5'- cCGUCUCGACGAGcUCCcacucuuggUGAaGGAGUc -3'
miRNA:   3'- cGUAGAGCUGCUCcAGGa--------GCU-CCUCA- -5'
16360 5' -55.1 NC_004084.1 + 49401 0.66 0.751306
Target:  5'- cGUAg-UCGuCGuGGUCCUCGAaccaGGAGUc -3'
miRNA:   3'- -CGUagAGCuGCuCCAGGAGCU----CCUCA- -5'
16360 5' -55.1 NC_004084.1 + 811 0.69 0.601306
Target:  5'- gGCga-UCGugGAGGUCCUCGucGAu- -3'
miRNA:   3'- -CGuagAGCugCUCCAGGAGCucCUca -5'
16360 5' -55.1 NC_004084.1 + 35134 0.68 0.633927
Target:  5'- -gAUCcugggCGuCGAGGUCCUCGGGGu-- -3'
miRNA:   3'- cgUAGa----GCuGCUCCAGGAGCUCCuca -5'
16360 5' -55.1 NC_004084.1 + 21110 0.68 0.64481
Target:  5'- aGCGUCgUCGAUGAGGUcgaacguggCCUCccaGAGGAcGUc -3'
miRNA:   3'- -CGUAG-AGCUGCUCCA---------GGAG---CUCCU-CA- -5'
16360 5' -55.1 NC_004084.1 + 15404 0.67 0.709515
Target:  5'- uGCGUCUCGuuGGGGaacUCCUCGAucgcgucGAGUu -3'
miRNA:   3'- -CGUAGAGCugCUCC---AGGAGCUc------CUCA- -5'
16360 5' -55.1 NC_004084.1 + 18887 0.68 0.633927
Target:  5'- cCAUCaCGAgGAGaUCCUCGAGGAcGUc -3'
miRNA:   3'- cGUAGaGCUgCUCcAGGAGCUCCU-CA- -5'
16360 5' -55.1 NC_004084.1 + 49735 0.67 0.698854
Target:  5'- -gGUCUCcucuuCGAGGUgCUCGAGuGGGUc -3'
miRNA:   3'- cgUAGAGcu---GCUCCAgGAGCUC-CUCA- -5'
16360 5' -55.1 NC_004084.1 + 16950 0.68 0.666533
Target:  5'- gGCGUCgCGACGucGGGUCUUCGAGc--- -3'
miRNA:   3'- -CGUAGaGCUGC--UCCAGGAGCUCcuca -5'
16360 5' -55.1 NC_004084.1 + 9864 0.68 0.623043
Target:  5'- cGCcUCgaccgCGACGAGGUUCUUGAacccugcccgGGAGa -3'
miRNA:   3'- -CGuAGa----GCUGCUCCAGGAGCU----------CCUCa -5'
16360 5' -55.1 NC_004084.1 + 11396 0.7 0.495418
Target:  5'- gGCAUCgucaUCGaucGCGAcGUCCUCGAGGAa- -3'
miRNA:   3'- -CGUAG----AGC---UGCUcCAGGAGCUCCUca -5'
16360 5' -55.1 NC_004084.1 + 53723 0.67 0.688129
Target:  5'- -gAUCUCGuCGGcucGGUCCUCGAcGAGc -3'
miRNA:   3'- cgUAGAGCuGCU---CCAGGAGCUcCUCa -5'
16360 5' -55.1 NC_004084.1 + 14675 0.67 0.688129
Target:  5'- aGCGUCcCGGCcGGGUCCUCGAuuGGc-- -3'
miRNA:   3'- -CGUAGaGCUGcUCCAGGAGCU--CCuca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.