miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16361 3' -57 NC_004084.1 + 53560 0.66 0.618609
Target:  5'- ---gGUCGUCCugcuuguggAGGUGCCGGaUGUGc -3'
miRNA:   3'- agagCGGCAGG---------UCCACGGCCaACAUc -5'
16361 3' -57 NC_004084.1 + 45820 0.67 0.586271
Target:  5'- cUCUgGCCGaUCCAcGGUGCCuGGgaGUc- -3'
miRNA:   3'- -AGAgCGGC-AGGU-CCACGG-CCaaCAuc -5'
16361 3' -57 NC_004084.1 + 40117 0.67 0.564884
Target:  5'- aUCUCGUCGcCCAGGUuCuCGGgUGUGa -3'
miRNA:   3'- -AGAGCGGCaGGUCCAcG-GCCaACAUc -5'
16361 3' -57 NC_004084.1 + 50808 0.68 0.543706
Target:  5'- cUUCGCCGucguagUCCAGcUGCUGGcUGUGGc -3'
miRNA:   3'- aGAGCGGC------AGGUCcACGGCCaACAUC- -5'
16361 3' -57 NC_004084.1 + 28481 0.68 0.542653
Target:  5'- -aUCGCCGUUCuGGUgagcagugacaacGCCGGUgucgguguUGUAGu -3'
miRNA:   3'- agAGCGGCAGGuCCA-------------CGGCCA--------ACAUC- -5'
16361 3' -57 NC_004084.1 + 1118 0.68 0.533214
Target:  5'- cCUCGUCGaggaggUCCuGGaugGCgCGGUUGUAGa -3'
miRNA:   3'- aGAGCGGC------AGGuCCa--CG-GCCAACAUC- -5'
16361 3' -57 NC_004084.1 + 19935 0.69 0.481968
Target:  5'- aUCUCGaccagcUCGUCCAGGUuggguagaGCCGGccGUGGu -3'
miRNA:   3'- -AGAGC------GGCAGGUCCA--------CGGCCaaCAUC- -5'
16361 3' -57 NC_004084.1 + 19853 0.69 0.462139
Target:  5'- -gUCGUCGaCCAgcugcugaccGGUGuuGGUUGUAGa -3'
miRNA:   3'- agAGCGGCaGGU----------CCACggCCAACAUC- -5'
16361 3' -57 NC_004084.1 + 28801 0.72 0.291379
Target:  5'- ---aGCCGacagCCAGGUGCC-GUUGUGGg -3'
miRNA:   3'- agagCGGCa---GGUCCACGGcCAACAUC- -5'
16361 3' -57 NC_004084.1 + 3895 1.09 0.000806
Target:  5'- aUCUCGCCGUCCAGGUGCCGGUUGUAGu -3'
miRNA:   3'- -AGAGCGGCAGGUCCACGGCCAACAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.