miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16362 5' -54.6 NC_004084.1 + 52566 0.66 0.773876
Target:  5'- uGCGCgaaGAUCcacgaggacugcggcGGCGUGGUCcgguGGGUCGa -3'
miRNA:   3'- uCGCGg--CUAG---------------UCGCACUAGu---CCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 21068 0.66 0.769813
Target:  5'- cAGUGCuuCGAgcUgGGCGUcGUCGGGAUCGc -3'
miRNA:   3'- -UCGCG--GCU--AgUCGCAcUAGUCCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 2780 0.67 0.710864
Target:  5'- cGCGCCGAUgGGUGaGAcggacccgccgaagaUCuGGAUCGa -3'
miRNA:   3'- uCGCGGCUAgUCGCaCU---------------AGuCCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 22546 0.67 0.673742
Target:  5'- aAGaCGaCCGAUCAcGCGguccgGAUCcGGGUCGa -3'
miRNA:   3'- -UC-GC-GGCUAGU-CGCa----CUAGuCCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 56611 0.68 0.618429
Target:  5'- cGuCGCCGGUCGGCGaGuUCGccGGAUCGu -3'
miRNA:   3'- uC-GCGGCUAGUCGCaCuAGU--CCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 18650 0.68 0.618429
Target:  5'- cGuCGCCGucuUCGGCG---UCGGGAUCAg -3'
miRNA:   3'- uC-GCGGCu--AGUCGCacuAGUCCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 45488 0.7 0.530994
Target:  5'- cGGCGUCGAUCAGCGUcuaccuGGcCGGGccgGUCGg -3'
miRNA:   3'- -UCGCGGCUAGUCGCA------CUaGUCC---UAGU- -5'
16362 5' -54.6 NC_004084.1 + 12143 0.7 0.509766
Target:  5'- -cCGCC-AUCGGCGaUGAUCAGG-UCAg -3'
miRNA:   3'- ucGCGGcUAGUCGC-ACUAGUCCuAGU- -5'
16362 5' -54.6 NC_004084.1 + 57207 0.71 0.44844
Target:  5'- cGcCGCCGAgccagcCAGCGU--UCAGGAUCGa -3'
miRNA:   3'- uC-GCGGCUa-----GUCGCAcuAGUCCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 30267 0.72 0.4099
Target:  5'- uGGCGauuucggaCGaAUCGGCGUGGUCGGGAa-- -3'
miRNA:   3'- -UCGCg-------GC-UAGUCGCACUAGUCCUagu -5'
16362 5' -54.6 NC_004084.1 + 38409 0.73 0.356125
Target:  5'- gAGCGCCGAUCGGauuccccguuCGaUGAUCGcuGGGUCGg -3'
miRNA:   3'- -UCGCGGCUAGUC----------GC-ACUAGU--CCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 11319 0.75 0.285168
Target:  5'- aGGUGCCGAcCGGCGgguuGUCGGGAUUAg -3'
miRNA:   3'- -UCGCGGCUaGUCGCac--UAGUCCUAGU- -5'
16362 5' -54.6 NC_004084.1 + 3159 1.08 0.001275
Target:  5'- gAGCGCCGAUCAGCGUGAUCAGGAUCAc -3'
miRNA:   3'- -UCGCGGCUAGUCGCACUAGUCCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.