Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16363 | 3' | -61.2 | NC_004084.1 | + | 12608 | 0.66 | 0.427667 |
|
Target: 5'- aGGGAacGAugUCCGGCCUgacCGGAUCg -3' miRNA: 3'- gCCCUacCU--AGGCCGGGaccGCCUAG- -5' |
|||||||
| 16363 | 3' | -61.2 | NC_004084.1 | + | 9210 | 0.67 | 0.374989 |
|
Target: 5'- -uGGAUGGAUCCcGUCCUGGauGAc- -3' miRNA: 3'- gcCCUACCUAGGcCGGGACCgcCUag -5' |
|||||||
| 16363 | 3' | -61.2 | NC_004084.1 | + | 31309 | 0.68 | 0.342393 |
|
Target: 5'- uGGGGuagcccuucUGGAUCCGGCUCgGGaucCGGAg- -3' miRNA: 3'- gCCCU---------ACCUAGGCCGGGaCC---GCCUag -5' |
|||||||
| 16363 | 3' | -61.2 | NC_004084.1 | + | 10729 | 0.68 | 0.324598 |
|
Target: 5'- uCGGGGUcgguuuccgguuggGGAUCCGGCUCgccagUGGgGGcGUCg -3' miRNA: 3'- -GCCCUA--------------CCUAGGCCGGG-----ACCgCC-UAG- -5' |
|||||||
| 16363 | 3' | -61.2 | NC_004084.1 | + | 55425 | 0.72 | 0.167045 |
|
Target: 5'- cCGGGG-GGGUCUGGCUCagUGGUGcGAUCu -3' miRNA: 3'- -GCCCUaCCUAGGCCGGG--ACCGC-CUAG- -5' |
|||||||
| 16363 | 3' | -61.2 | NC_004084.1 | + | 2951 | 1.09 | 0.000276 |
|
Target: 5'- cCGGGAUGGAUCCGGCCCUGGCGGAUCa -3' miRNA: 3'- -GCCCUACCUAGGCCGGGACCGCCUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home