Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16363 | 5' | -56.7 | NC_004084.1 | + | 47658 | 0.73 | 0.279737 |
Target: 5'- gAGGUCgGCGacgcccCCACUggcGAGCCGGAUCCCc -3' miRNA: 3'- aUCUAG-CGU------GGUGA---CUCGGUCUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 58257 | 0.66 | 0.649438 |
Target: 5'- -cGAUCGCgACCACUacGCCu-GCCCUg -3' miRNA: 3'- auCUAGCG-UGGUGAcuCGGucUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 18956 | 0.66 | 0.616583 |
Target: 5'- -cGAU-GCACggaGCUGAGCUAcGACUCCu -3' miRNA: 3'- auCUAgCGUGg--UGACUCGGU-CUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 57119 | 0.67 | 0.573004 |
Target: 5'- gAGAUCcUAUCACUcaucgagcGAGCCGGGcauCCCCg -3' miRNA: 3'- aUCUAGcGUGGUGA--------CUCGGUCU---GGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 41439 | 0.67 | 0.537602 |
Target: 5'- -cGAUCGCuuCUACcGAGUCguccaggcgcucgaAGACCCCg -3' miRNA: 3'- auCUAGCGu-GGUGaCUCGG--------------UCUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 2774 | 0.68 | 0.530185 |
Target: 5'- gUGGAgCGCGCCGaugggUGAGaCGGACCCg -3' miRNA: 3'- -AUCUaGCGUGGUg----ACUCgGUCUGGGg -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 40042 | 0.68 | 0.488591 |
Target: 5'- aAGAcggGCugCACguccGAGCCGucGACCCCg -3' miRNA: 3'- aUCUag-CGugGUGa---CUCGGU--CUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 18667 | 0.69 | 0.429282 |
Target: 5'- cGGAagGUGCCACcuacGCCAGACCCg -3' miRNA: 3'- aUCUagCGUGGUGacu-CGGUCUGGGg -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 43602 | 0.72 | 0.286129 |
Target: 5'- gGGAUCGCgaguacgGCCGCUG-GCCGGACaaCCu -3' miRNA: 3'- aUCUAGCG-------UGGUGACuCGGUCUGg-GG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 56633 | 0.76 | 0.174678 |
Target: 5'- cGGAUCGUggcucagaacgACCACcucGCCAGGCCCCg -3' miRNA: 3'- aUCUAGCG-----------UGGUGacuCGGUCUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 35685 | 0.7 | 0.419813 |
Target: 5'- ---cUCGUACCGCUGGGC-GGACUUCg -3' miRNA: 3'- aucuAGCGUGGUGACUCGgUCUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 20867 | 0.68 | 0.519656 |
Target: 5'- -uGAUCGguCCACUccacGGUCAGucaGCCCCg -3' miRNA: 3'- auCUAGCguGGUGAc---UCGGUC---UGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 51046 | 0.68 | 0.530185 |
Target: 5'- -cGGUCGCuguucuuCUGCUGuuccucguagauGGCCuGACCCCa -3' miRNA: 3'- auCUAGCGu------GGUGAC------------UCGGuCUGGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 16153 | 0.67 | 0.551468 |
Target: 5'- -uGGUCGCGCUGCUcGAGCaucacucGACCaCCa -3' miRNA: 3'- auCUAGCGUGGUGA-CUCGgu-----CUGG-GG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 50893 | 0.67 | 0.573004 |
Target: 5'- cUGGAUggcUGCAcCCACUcGGGCgCAGucuCCCCg -3' miRNA: 3'- -AUCUA---GCGU-GGUGA-CUCG-GUCu--GGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 52147 | 0.67 | 0.594731 |
Target: 5'- cGGAU-GC-CCGCcggGGGCCAGugCUCa -3' miRNA: 3'- aUCUAgCGuGGUGa--CUCGGUCugGGG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 33023 | 0.66 | 0.616583 |
Target: 5'- gAGAUCGC-CCACaugaagcggaccUGGGUCAaGCCCg -3' miRNA: 3'- aUCUAGCGuGGUG------------ACUCGGUcUGGGg -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 57201 | 0.66 | 0.616583 |
Target: 5'- -cGAUCcCGCCGCcGAGCCAG-CCa- -3' miRNA: 3'- auCUAGcGUGGUGaCUCGGUCuGGgg -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 17274 | 0.66 | 0.638489 |
Target: 5'- -uGAUCGCACUcagGAGCCuGACaggCCa -3' miRNA: 3'- auCUAGCGUGGugaCUCGGuCUGg--GG- -5' |
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16363 | 5' | -56.7 | NC_004084.1 | + | 49846 | 0.66 | 0.638489 |
Target: 5'- gAGGUCGCGCuCGCUcaccuuGUCGGACUCg -3' miRNA: 3'- aUCUAGCGUG-GUGAcu----CGGUCUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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