miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16364 5' -53.2 NC_004084.1 + 57644 0.66 0.851583
Target:  5'- cGCGucgCCUCGAcgAGccgAUcgGCCUGGUGGu -3'
miRNA:   3'- aCGUca-GGAGCU--UCa--UG--UGGACCACC- -5'
16364 5' -53.2 NC_004084.1 + 17264 0.66 0.851583
Target:  5'- gUGCAGUCggCGA--UGC-CCUcGGUGGa -3'
miRNA:   3'- -ACGUCAGgaGCUucAUGuGGA-CCACC- -5'
16364 5' -53.2 NC_004084.1 + 22141 0.66 0.834045
Target:  5'- aGCAgacaucccGUCCUUGAGGUAgccCAgCUGGcGGa -3'
miRNA:   3'- aCGU--------CAGGAGCUUCAU---GUgGACCaCC- -5'
16364 5' -53.2 NC_004084.1 + 21165 0.66 0.834045
Target:  5'- aGCgAGUCCUCGAcGaGCGCCgGGa-- -3'
miRNA:   3'- aCG-UCAGGAGCUuCaUGUGGaCCacc -5'
16364 5' -53.2 NC_004084.1 + 50071 0.66 0.815643
Target:  5'- aGCuGGUCCUCGGAGacgaugaGCGCCgGGUu- -3'
miRNA:   3'- aCG-UCAGGAGCUUCa------UGUGGaCCAcc -5'
16364 5' -53.2 NC_004084.1 + 22449 0.67 0.785604
Target:  5'- cGCcGUCUUCGggG-GCGCUcgcgacggcugcgUGGUGGc -3'
miRNA:   3'- aCGuCAGGAGCuuCaUGUGG-------------ACCACC- -5'
16364 5' -53.2 NC_004084.1 + 56271 0.67 0.776576
Target:  5'- aUGaAGUCCUCGGucgucuGGUG-ACCUcGGUGGa -3'
miRNA:   3'- -ACgUCAGGAGCU------UCAUgUGGA-CCACC- -5'
16364 5' -53.2 NC_004084.1 + 21011 0.68 0.713655
Target:  5'- cGCAGgccaUCCUCGAG--GCGCgUGGUGc -3'
miRNA:   3'- aCGUC----AGGAGCUUcaUGUGgACCACc -5'
16364 5' -53.2 NC_004084.1 + 29561 0.68 0.702814
Target:  5'- aGCAGgCCgUUGAGGgccauCGCCgGGUGGg -3'
miRNA:   3'- aCGUCaGG-AGCUUCau---GUGGaCCACC- -5'
16364 5' -53.2 NC_004084.1 + 9025 0.68 0.702814
Target:  5'- cGUAGUCCUCGGAGaggGCAuggaacucgcUCUGGUu- -3'
miRNA:   3'- aCGUCAGGAGCUUCa--UGU----------GGACCAcc -5'
16364 5' -53.2 NC_004084.1 + 36210 0.69 0.696276
Target:  5'- gGCGGggaaccucuccggucUCCUCGAGGgcaACC-GGUGGg -3'
miRNA:   3'- aCGUC---------------AGGAGCUUCaugUGGaCCACC- -5'
16364 5' -53.2 NC_004084.1 + 22353 0.7 0.603429
Target:  5'- cGCGGUCCUCGucGUAucccCACCagGGUa- -3'
miRNA:   3'- aCGUCAGGAGCuuCAU----GUGGa-CCAcc -5'
16364 5' -53.2 NC_004084.1 + 11567 0.7 0.603429
Target:  5'- cGCuGUCCUCGAGGaaucgACACUgaacGGUGu -3'
miRNA:   3'- aCGuCAGGAGCUUCa----UGUGGa---CCACc -5'
16364 5' -53.2 NC_004084.1 + 30660 0.72 0.495429
Target:  5'- cGCuGUgagCGGAGUACuCCUGGUGGg -3'
miRNA:   3'- aCGuCAggaGCUUCAUGuGGACCACC- -5'
16364 5' -53.2 NC_004084.1 + 36563 0.73 0.425258
Target:  5'- cGCAGUCCUCGAGGUACGgucaguacuCCgcaUGGc -3'
miRNA:   3'- aCGUCAGGAGCUUCAUGU---------GGaccACC- -5'
16364 5' -53.2 NC_004084.1 + 8956 0.75 0.35279
Target:  5'- uUGUAGUCCUCGugcuGGUGCAUCUGuUGa -3'
miRNA:   3'- -ACGUCAGGAGCu---UCAUGUGGACcACc -5'
16364 5' -53.2 NC_004084.1 + 2125 1.11 0.001368
Target:  5'- aUGCAGUCCUCGAAGUACACCUGGUGGu -3'
miRNA:   3'- -ACGUCAGGAGCUUCAUGUGGACCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.