miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16365 3' -54.9 NC_004084.1 + 35045 0.66 0.776529
Target:  5'- gUGGC-UCGCGACggauccgaACGUCGaCGUCgacCCg -3'
miRNA:   3'- gACCGaAGUGCUG--------UGCGGC-GUAGa--GG- -5'
16365 3' -54.9 NC_004084.1 + 29712 0.66 0.776529
Target:  5'- nCUGGCUgagUCGCGucguCugGCCGuCcgC-CCa -3'
miRNA:   3'- -GACCGA---AGUGCu---GugCGGC-GuaGaGG- -5'
16365 3' -54.9 NC_004084.1 + 29057 0.66 0.776529
Target:  5'- gCUGGCaggcCGCGAC-CGCCcgcucggggGCGUCgucgCCg -3'
miRNA:   3'- -GACCGaa--GUGCUGuGCGG---------CGUAGa---GG- -5'
16365 3' -54.9 NC_004084.1 + 48472 0.66 0.756304
Target:  5'- uUGGCUacUC-CGACcCGCCGacgcaCGUCUCa -3'
miRNA:   3'- gACCGA--AGuGCUGuGCGGC-----GUAGAGg -5'
16365 3' -54.9 NC_004084.1 + 51257 0.66 0.756304
Target:  5'- -cGGCUUCgucaGCGGCgaACGCUGUGUCgUCg -3'
miRNA:   3'- gaCCGAAG----UGCUG--UGCGGCGUAG-AGg -5'
16365 3' -54.9 NC_004084.1 + 31412 0.66 0.735576
Target:  5'- -cGGCgaagUCgcagACGACGCgGCCGCgauggaucugGUCUCUg -3'
miRNA:   3'- gaCCGa---AG----UGCUGUG-CGGCG----------UAGAGG- -5'
16365 3' -54.9 NC_004084.1 + 32601 0.67 0.725051
Target:  5'- gUGGCUaCGCGAC-CGUUcCAUaCUCCa -3'
miRNA:   3'- gACCGAaGUGCUGuGCGGcGUA-GAGG- -5'
16365 3' -54.9 NC_004084.1 + 24643 0.67 0.725051
Target:  5'- gUGGCUaCGCGAC-CGUUcCAUaCUCCa -3'
miRNA:   3'- gACCGAaGUGCUGuGCGGcGUA-GAGG- -5'
16365 3' -54.9 NC_004084.1 + 35323 0.67 0.723994
Target:  5'- gCUGGCUauccgaggUCGcCGACGuccaccuCGUCGCGUCgCCg -3'
miRNA:   3'- -GACCGA--------AGU-GCUGU-------GCGGCGUAGaGG- -5'
16365 3' -54.9 NC_004084.1 + 22461 0.67 0.714436
Target:  5'- -gGGCgcUCGCGACG-GCUGCGUgguggcggCUCCa -3'
miRNA:   3'- gaCCGa-AGUGCUGUgCGGCGUA--------GAGG- -5'
16365 3' -54.9 NC_004084.1 + 46724 0.67 0.703739
Target:  5'- aUGGCUUC-CGACgccguguagACGUCGC-UgUCCu -3'
miRNA:   3'- gACCGAAGuGCUG---------UGCGGCGuAgAGG- -5'
16365 3' -54.9 NC_004084.1 + 38002 0.67 0.692974
Target:  5'- -cGGauuacaUCACGACGCGCgGacucuCGUCUCCc -3'
miRNA:   3'- gaCCga----AGUGCUGUGCGgC-----GUAGAGG- -5'
16365 3' -54.9 NC_004084.1 + 29683 0.67 0.68215
Target:  5'- -gGGgUUCGCGACGCGgUCGCGgacgcUgUCCu -3'
miRNA:   3'- gaCCgAAGUGCUGUGC-GGCGU-----AgAGG- -5'
16365 3' -54.9 NC_004084.1 + 28645 0.67 0.671279
Target:  5'- -cGGCUUCcgcgaggggACGACcuacCGCCGCAgcgagCUCa -3'
miRNA:   3'- gaCCGAAG---------UGCUGu---GCGGCGUa----GAGg -5'
16365 3' -54.9 NC_004084.1 + 37129 0.68 0.660371
Target:  5'- gUGGCUUCuCGACGCGgUCGU---UCCg -3'
miRNA:   3'- gACCGAAGuGCUGUGC-GGCGuagAGG- -5'
16365 3' -54.9 NC_004084.1 + 28965 0.68 0.649438
Target:  5'- -gGGCaUCGCGccCACGCCGCGUUc-- -3'
miRNA:   3'- gaCCGaAGUGCu-GUGCGGCGUAGagg -5'
16365 3' -54.9 NC_004084.1 + 5249 0.68 0.638489
Target:  5'- uUGGCUUCGCGGCGCacacgaggaggGCC-UAUCgaUCCc -3'
miRNA:   3'- gACCGAAGUGCUGUG-----------CGGcGUAG--AGG- -5'
16365 3' -54.9 NC_004084.1 + 30885 0.68 0.627534
Target:  5'- -cGaGCUUCuCGACaACGgCGCgAUCUCCc -3'
miRNA:   3'- gaC-CGAAGuGCUG-UGCgGCG-UAGAGG- -5'
16365 3' -54.9 NC_004084.1 + 47351 0.69 0.550398
Target:  5'- gCUGGCgacccagUUC-CGGCugGUucUGCGUCUCCc -3'
miRNA:   3'- -GACCG-------AAGuGCUGugCG--GCGUAGAGG- -5'
16365 3' -54.9 NC_004084.1 + 51811 0.7 0.50921
Target:  5'- gUGGU---ACuGCGCGCCGCAgaUCUCCu -3'
miRNA:   3'- gACCGaagUGcUGUGCGGCGU--AGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.