miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16365 5' -58.5 NC_004084.1 + 1960 1.09 0.000599
Target:  5'- aCGGAAGACCGAGAGCGCGCCGUCGAGa -3'
miRNA:   3'- -GCCUUCUGGCUCUCGCGCGGCAGCUC- -5'
16365 5' -58.5 NC_004084.1 + 1538 0.78 0.101988
Target:  5'- uCGGucuGGACCGAG-GCGacgGCCGUCGAGc -3'
miRNA:   3'- -GCCu--UCUGGCUCuCGCg--CGGCAGCUC- -5'
16365 5' -58.5 NC_004084.1 + 24801 0.74 0.214305
Target:  5'- -aGAGGACUGAucGUGCGCCGaUCGAGa -3'
miRNA:   3'- gcCUUCUGGCUcuCGCGCGGC-AGCUC- -5'
16365 5' -58.5 NC_004084.1 + 50594 0.73 0.231243
Target:  5'- gCGGAu--CUGGGAGCGUGCCuccagcGUCGAGg -3'
miRNA:   3'- -GCCUucuGGCUCUCGCGCGG------CAGCUC- -5'
16365 5' -58.5 NC_004084.1 + 17973 0.73 0.237135
Target:  5'- aCGGcGGaAUCGucGGCGCGCUGUCGAGc -3'
miRNA:   3'- -GCCuUC-UGGCucUCGCGCGGCAGCUC- -5'
16365 5' -58.5 NC_004084.1 + 46313 0.7 0.349074
Target:  5'- aGGAuGAUCGAGAGCGUGUcaccuuCGcCGAGu -3'
miRNA:   3'- gCCUuCUGGCUCUCGCGCG------GCaGCUC- -5'
16365 5' -58.5 NC_004084.1 + 19505 0.7 0.373845
Target:  5'- aGG-AGcCCGGGAGCGaaCGCCGguUCGAGc -3'
miRNA:   3'- gCCuUCuGGCUCUCGC--GCGGC--AGCUC- -5'
16365 5' -58.5 NC_004084.1 + 28912 0.7 0.382363
Target:  5'- gCGGGuguGcCCGAGAGCGaCGUCGgccUCGGGa -3'
miRNA:   3'- -GCCUu--CuGGCUCUCGC-GCGGC---AGCUC- -5'
16365 5' -58.5 NC_004084.1 + 17023 0.7 0.382363
Target:  5'- gGGAuccgcGACCGAGcgucuGCGC-CCGUCGAu -3'
miRNA:   3'- gCCUu----CUGGCUCu----CGCGcGGCAGCUc -5'
16365 5' -58.5 NC_004084.1 + 56172 0.7 0.382363
Target:  5'- aCGGcAAGACCGAGGagaucuccGCGCugGCCGaagCGAGc -3'
miRNA:   3'- -GCC-UUCUGGCUCU--------CGCG--CGGCa--GCUC- -5'
16365 5' -58.5 NC_004084.1 + 51157 0.68 0.47132
Target:  5'- aGGAGGcgaucgagacggucGCCGAGcaCGCGCCGaucgUCGAGg -3'
miRNA:   3'- gCCUUC--------------UGGCUCucGCGCGGC----AGCUC- -5'
16365 5' -58.5 NC_004084.1 + 22205 0.68 0.474239
Target:  5'- uCGaGGAGACCgGAGAGguucccCGCcucGCCGUCGAa -3'
miRNA:   3'- -GC-CUUCUGG-CUCUC------GCG---CGGCAGCUc -5'
16365 5' -58.5 NC_004084.1 + 20404 0.68 0.474239
Target:  5'- uGGGAGA-CGAGAGUcCGCgCGUCGuGa -3'
miRNA:   3'- gCCUUCUgGCUCUCGcGCG-GCAGCuC- -5'
16365 5' -58.5 NC_004084.1 + 49059 0.68 0.474239
Target:  5'- uCGGAAGAUCGuGAccgucgacGUGCGaCgGUCGGGa -3'
miRNA:   3'- -GCCUUCUGGCuCU--------CGCGC-GgCAGCUC- -5'
16365 5' -58.5 NC_004084.1 + 16719 0.67 0.503912
Target:  5'- -cGAAGACCGGGA-CGCGCuCGcCGGu -3'
miRNA:   3'- gcCUUCUGGCUCUcGCGCG-GCaGCUc -5'
16365 5' -58.5 NC_004084.1 + 27514 0.67 0.513983
Target:  5'- -cGAGGACCuccuccgggGAGAuCGCGCCGuugUCGAGa -3'
miRNA:   3'- gcCUUCUGG---------CUCUcGCGCGGC---AGCUC- -5'
16365 5' -58.5 NC_004084.1 + 33206 0.67 0.521081
Target:  5'- uGGGAG-CCGAagacagaggcggccGAGCGgGCCGUCc-- -3'
miRNA:   3'- gCCUUCuGGCU--------------CUCGCgCGGCAGcuc -5'
16365 5' -58.5 NC_004084.1 + 6780 0.67 0.523116
Target:  5'- gCGGAAcGCCGAagacgucGGGgaucagcuccCGCGCCGUCGAc -3'
miRNA:   3'- -GCCUUcUGGCU-------CUC----------GCGCGGCAGCUc -5'
16365 5' -58.5 NC_004084.1 + 30042 0.67 0.524134
Target:  5'- uCGcGggGGCCGcucGCGUcguugugccaGCCGUCGAGg -3'
miRNA:   3'- -GC-CuuCUGGCucuCGCG----------CGGCAGCUC- -5'
16365 5' -58.5 NC_004084.1 + 32097 0.67 0.534362
Target:  5'- aCGGAuGGACgagcuCGAGcAGCuCGUCGUCGAGc -3'
miRNA:   3'- -GCCU-UCUG-----GCUC-UCGcGCGGCAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.