miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16366 3' -61.3 NC_004084.1 + 55254 0.66 0.466522
Target:  5'- cGUCGACGacgucuaCGGUCGGcGGCGUGUagaUCGu -3'
miRNA:   3'- -CAGCUGC-------GCUAGCCcCCGCGCG---AGCu -5'
16366 3' -61.3 NC_004084.1 + 31932 0.66 0.457999
Target:  5'- --aGACGCGAccacacucaacgUCGccGGCGCGCUCa- -3'
miRNA:   3'- cagCUGCGCU------------AGCccCCGCGCGAGcu -5'
16366 3' -61.3 NC_004084.1 + 14392 0.66 0.448628
Target:  5'- cUCGGCGaGAUCGGGGcGaUGUuCUCGAa -3'
miRNA:   3'- cAGCUGCgCUAGCCCC-C-GCGcGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 37579 0.66 0.438443
Target:  5'- cGUCGACGagcCGAggcacucUCGGGGaGCGCuCUCa- -3'
miRNA:   3'- -CAGCUGC---GCU-------AGCCCC-CGCGcGAGcu -5'
16366 3' -61.3 NC_004084.1 + 33385 0.66 0.421169
Target:  5'- aUCgGAUGCGAucuccucuggaUCGGGcGGC-UGCUCGAg -3'
miRNA:   3'- cAG-CUGCGCU-----------AGCCC-CCGcGCGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 16112 0.67 0.413131
Target:  5'- gGUCGuCGCGAUCGucgccgaucgugaacGGGugaccgcgguggucGCGCuGCUCGAg -3'
miRNA:   3'- -CAGCuGCGCUAGC---------------CCC--------------CGCG-CGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 30033 0.67 0.412244
Target:  5'- aUCGAgGUcucgCGGGGGC-CGCUCGc -3'
miRNA:   3'- cAGCUgCGcua-GCCCCCGcGCGAGCu -5'
16366 3' -61.3 NC_004084.1 + 30283 0.67 0.394749
Target:  5'- aUCGGCGUGGUCGGGaaGGC-CGCg--- -3'
miRNA:   3'- cAGCUGCGCUAGCCC--CCGcGCGagcu -5'
16366 3' -61.3 NC_004084.1 + 28094 0.67 0.394749
Target:  5'- -cCGACGgucaaCGGUUcGGGGUGCGcCUCGAc -3'
miRNA:   3'- caGCUGC-----GCUAGcCCCCGCGC-GAGCU- -5'
16366 3' -61.3 NC_004084.1 + 3455 0.67 0.369424
Target:  5'- uGUCGGauCGCGAgcgcCGGGGGaauacggaacgGCGUUCGAc -3'
miRNA:   3'- -CAGCU--GCGCUa---GCCCCCg----------CGCGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 22580 0.68 0.361234
Target:  5'- uUCGGC-CGAUCggcgucuggGGGGGCcuucGUGCUCGGc -3'
miRNA:   3'- cAGCUGcGCUAG---------CCCCCG----CGCGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 7081 0.68 0.345235
Target:  5'- cGUCGACGaaGAucUCGcGGGCGCaCUCGAu -3'
miRNA:   3'- -CAGCUGCg-CU--AGCcCCCGCGcGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 6889 0.68 0.345235
Target:  5'- -aCGACGCGAUCGaaaugGCGCUCGAg -3'
miRNA:   3'- caGCUGCGCUAGCccccgCGCGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 6342 0.69 0.314051
Target:  5'- cGUCGgcgauguACGCGA-CGaaGGGGCGCGacCUCGAg -3'
miRNA:   3'- -CAGC-------UGCGCUaGC--CCCCGCGC--GAGCU- -5'
16366 3' -61.3 NC_004084.1 + 39046 0.69 0.290535
Target:  5'- gGUCGAUGCGAUCGGGacguugucgaucaGCaggucgcugucGCGCUUGAg -3'
miRNA:   3'- -CAGCUGCGCUAGCCCc------------CG-----------CGCGAGCU- -5'
16366 3' -61.3 NC_004084.1 + 39584 0.73 0.161092
Target:  5'- cGUCGACGaGGUCccGGGCGCGCUUGu -3'
miRNA:   3'- -CAGCUGCgCUAGccCCCGCGCGAGCu -5'
16366 3' -61.3 NC_004084.1 + 1025 1.08 0.000371
Target:  5'- cGUCGACGCGAUCGGGGGCGCGCUCGAg -3'
miRNA:   3'- -CAGCUGCGCUAGCCCCCGCGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.