Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16366 | 3' | -61.3 | NC_004084.1 | + | 1025 | 1.08 | 0.000371 |
Target: 5'- cGUCGACGCGAUCGGGGGCGCGCUCGAg -3' miRNA: 3'- -CAGCUGCGCUAGCCCCCGCGCGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 39584 | 0.73 | 0.161092 |
Target: 5'- cGUCGACGaGGUCccGGGCGCGCUUGu -3' miRNA: 3'- -CAGCUGCgCUAGccCCCGCGCGAGCu -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 39046 | 0.69 | 0.290535 |
Target: 5'- gGUCGAUGCGAUCGGGacguugucgaucaGCaggucgcugucGCGCUUGAg -3' miRNA: 3'- -CAGCUGCGCUAGCCCc------------CG-----------CGCGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 6342 | 0.69 | 0.314051 |
Target: 5'- cGUCGgcgauguACGCGA-CGaaGGGGCGCGacCUCGAg -3' miRNA: 3'- -CAGC-------UGCGCUaGC--CCCCGCGC--GAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 6889 | 0.68 | 0.345235 |
Target: 5'- -aCGACGCGAUCGaaaugGCGCUCGAg -3' miRNA: 3'- caGCUGCGCUAGCccccgCGCGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 7081 | 0.68 | 0.345235 |
Target: 5'- cGUCGACGaaGAucUCGcGGGCGCaCUCGAu -3' miRNA: 3'- -CAGCUGCg-CU--AGCcCCCGCGcGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 22580 | 0.68 | 0.361234 |
Target: 5'- uUCGGC-CGAUCggcgucuggGGGGGCcuucGUGCUCGGc -3' miRNA: 3'- cAGCUGcGCUAG---------CCCCCG----CGCGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 3455 | 0.67 | 0.369424 |
Target: 5'- uGUCGGauCGCGAgcgcCGGGGGaauacggaacgGCGUUCGAc -3' miRNA: 3'- -CAGCU--GCGCUa---GCCCCCg----------CGCGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 28094 | 0.67 | 0.394749 |
Target: 5'- -cCGACGgucaaCGGUUcGGGGUGCGcCUCGAc -3' miRNA: 3'- caGCUGC-----GCUAGcCCCCGCGC-GAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 30283 | 0.67 | 0.394749 |
Target: 5'- aUCGGCGUGGUCGGGaaGGC-CGCg--- -3' miRNA: 3'- cAGCUGCGCUAGCCC--CCGcGCGagcu -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 30033 | 0.67 | 0.412244 |
Target: 5'- aUCGAgGUcucgCGGGGGC-CGCUCGc -3' miRNA: 3'- cAGCUgCGcua-GCCCCCGcGCGAGCu -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 16112 | 0.67 | 0.413131 |
Target: 5'- gGUCGuCGCGAUCGucgccgaucgugaacGGGugaccgcgguggucGCGCuGCUCGAg -3' miRNA: 3'- -CAGCuGCGCUAGC---------------CCC--------------CGCG-CGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 33385 | 0.66 | 0.421169 |
Target: 5'- aUCgGAUGCGAucuccucuggaUCGGGcGGC-UGCUCGAg -3' miRNA: 3'- cAG-CUGCGCU-----------AGCCC-CCGcGCGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 37579 | 0.66 | 0.438443 |
Target: 5'- cGUCGACGagcCGAggcacucUCGGGGaGCGCuCUCa- -3' miRNA: 3'- -CAGCUGC---GCU-------AGCCCC-CGCGcGAGcu -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 14392 | 0.66 | 0.448628 |
Target: 5'- cUCGGCGaGAUCGGGGcGaUGUuCUCGAa -3' miRNA: 3'- cAGCUGCgCUAGCCCC-C-GCGcGAGCU- -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 31932 | 0.66 | 0.457999 |
Target: 5'- --aGACGCGAccacacucaacgUCGccGGCGCGCUCa- -3' miRNA: 3'- cagCUGCGCU------------AGCccCCGCGCGAGcu -5' |
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16366 | 3' | -61.3 | NC_004084.1 | + | 55254 | 0.66 | 0.466522 |
Target: 5'- cGUCGACGacgucuaCGGUCGGcGGCGUGUagaUCGu -3' miRNA: 3'- -CAGCUGC-------GCUAGCCcCCGCGCG---AGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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