miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16366 5' -54.4 NC_004084.1 + 29223 0.66 0.801027
Target:  5'- cGUCGAcguuguucGCGGgCgaguACUCGUCGCGCc-- -3'
miRNA:   3'- cCAGCU--------UGUCgG----UGAGCAGCGCGuag -5'
16366 5' -54.4 NC_004084.1 + 4960 0.66 0.801027
Target:  5'- -aUCGAGCAGUgGCUCcagaGCGCcUCg -3'
miRNA:   3'- ccAGCUUGUCGgUGAGcag-CGCGuAG- -5'
16366 5' -54.4 NC_004084.1 + 25004 0.66 0.791354
Target:  5'- uGUUGA--GGCC-CUCGUacgCGUGCGUCg -3'
miRNA:   3'- cCAGCUugUCGGuGAGCA---GCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 53499 0.66 0.781515
Target:  5'- cGUCG-ACGGCgaAgUCGUCGUGCGg- -3'
miRNA:   3'- cCAGCuUGUCGg-UgAGCAGCGCGUag -5'
16366 5' -54.4 NC_004084.1 + 16393 0.66 0.777536
Target:  5'- uGUCGAccgccucgcucgcgACGGCCACUCGagcaaagacggcgUCGauguggGCAUCg -3'
miRNA:   3'- cCAGCU--------------UGUCGGUGAGC-------------AGCg-----CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 32110 0.66 0.771522
Target:  5'- -cUCGAGCAGCUcgUCGUCGaGCAc- -3'
miRNA:   3'- ccAGCUUGUCGGugAGCAGCgCGUag -5'
16366 5' -54.4 NC_004084.1 + 57039 0.66 0.761386
Target:  5'- uGUCGucCGGCCGCUU-UCGCGUcccgAUCa -3'
miRNA:   3'- cCAGCuuGUCGGUGAGcAGCGCG----UAG- -5'
16366 5' -54.4 NC_004084.1 + 15627 0.67 0.751118
Target:  5'- gGGUUGAACuuCCACUCGUCacCGUgAUCc -3'
miRNA:   3'- -CCAGCUUGucGGUGAGCAGc-GCG-UAG- -5'
16366 5' -54.4 NC_004084.1 + 56122 0.67 0.730232
Target:  5'- cGUCGuGC-GCCGCagugUCGUCG-GCGUCg -3'
miRNA:   3'- cCAGCuUGuCGGUG----AGCAGCgCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 31112 0.67 0.730232
Target:  5'- cGGUCGAAUAuCaGCUCGUCGaGCcgCg -3'
miRNA:   3'- -CCAGCUUGUcGgUGAGCAGCgCGuaG- -5'
16366 5' -54.4 NC_004084.1 + 31269 0.67 0.719638
Target:  5'- cGGUCGAGCucgaacguGGCCG---GUCGCGgGUCc -3'
miRNA:   3'- -CCAGCUUG--------UCGGUgagCAGCGCgUAG- -5'
16366 5' -54.4 NC_004084.1 + 35896 0.67 0.708956
Target:  5'- cGGUCGGACGucCCGCUggaGUgGCcGCGUCg -3'
miRNA:   3'- -CCAGCUUGUc-GGUGAg--CAgCG-CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 34909 0.67 0.705737
Target:  5'- uGGUCGGAgcacucgaagcuccCGGCCAuCUCGUcaCGgGCGUUc -3'
miRNA:   3'- -CCAGCUU--------------GUCGGU-GAGCA--GCgCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 32418 0.68 0.6982
Target:  5'- cGUCGAcgAGCucgCACUCGUCGCGaacgagGUCg -3'
miRNA:   3'- cCAGCUugUCG---GUGAGCAGCGCg-----UAG- -5'
16366 5' -54.4 NC_004084.1 + 15002 0.68 0.6982
Target:  5'- aGUUGAcgaagaugcGCuGCgGCUCGUCGaGCGUCg -3'
miRNA:   3'- cCAGCU---------UGuCGgUGAGCAGCgCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 51199 0.68 0.697121
Target:  5'- aGGUCGGcgcuggcGCgGGCUACUgggCGUgGUGCGUCg -3'
miRNA:   3'- -CCAGCU-------UG-UCGGUGA---GCAgCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 11471 0.68 0.691715
Target:  5'- -uUCGaAGCAGCCGCUCGggcacgacagaucgaUCGUuucagGCAUCu -3'
miRNA:   3'- ccAGC-UUGUCGGUGAGC---------------AGCG-----CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 12176 0.68 0.684123
Target:  5'- aGGUCGcaggguacguccccAGCGGCgACcugaugaugaUCGUCGaCGCAUCc -3'
miRNA:   3'- -CCAGC--------------UUGUCGgUG----------AGCAGC-GCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 2173 0.68 0.676507
Target:  5'- cGUCGAuGCAGUCGCUCGa-GCGCc-- -3'
miRNA:   3'- cCAGCU-UGUCGGUGAGCagCGCGuag -5'
16366 5' -54.4 NC_004084.1 + 28714 0.68 0.676507
Target:  5'- -cUCGAACGGCCGCgCGgguUCGgCGCAg- -3'
miRNA:   3'- ccAGCUUGUCGGUGaGC---AGC-GCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.