miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16366 5' -54.4 NC_004084.1 + 2173 0.68 0.676507
Target:  5'- cGUCGAuGCAGUCGCUCGa-GCGCc-- -3'
miRNA:   3'- cCAGCU-UGUCGGUGAGCagCGCGuag -5'
16366 5' -54.4 NC_004084.1 + 17689 0.68 0.64368
Target:  5'- uGGUCGAGCuucgagacGCUACUgagcCGuUCGCgGCAUCa -3'
miRNA:   3'- -CCAGCUUGu-------CGGUGA----GC-AGCG-CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 32418 0.68 0.6982
Target:  5'- cGUCGAcgAGCucgCACUCGUCGCGaacgagGUCg -3'
miRNA:   3'- cCAGCUugUCG---GUGAGCAGCGCg-----UAG- -5'
16366 5' -54.4 NC_004084.1 + 51199 0.68 0.697121
Target:  5'- aGGUCGGcgcuggcGCgGGCUACUgggCGUgGUGCGUCg -3'
miRNA:   3'- -CCAGCU-------UG-UCGGUGA---GCAgCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 12176 0.68 0.684123
Target:  5'- aGGUCGcaggguacguccccAGCGGCgACcugaugaugaUCGUCGaCGCAUCc -3'
miRNA:   3'- -CCAGC--------------UUGUCGgUG----------AGCAGC-GCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 28714 0.68 0.676507
Target:  5'- -cUCGAACGGCCGCgCGgguUCGgCGCAg- -3'
miRNA:   3'- ccAGCUUGUCGGUGaGC---AGC-GCGUag -5'
16366 5' -54.4 NC_004084.1 + 37325 0.69 0.621726
Target:  5'- cGGUCGAAguGCUccguacuCUCGUCaccaGCGUCg -3'
miRNA:   3'- -CCAGCUUguCGGu------GAGCAGcg--CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 35443 0.69 0.610758
Target:  5'- aGGUCGAccaggacuCGGUCGgcCUCGUCGCGaguGUCg -3'
miRNA:   3'- -CCAGCUu-------GUCGGU--GAGCAGCGCg--UAG- -5'
16366 5' -54.4 NC_004084.1 + 2330 0.69 0.599808
Target:  5'- uGUUGAGCuccuGCCGCcagagUCGUCGUuccGCGUCg -3'
miRNA:   3'- cCAGCUUGu---CGGUG-----AGCAGCG---CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 38485 0.69 0.621726
Target:  5'- gGGUUGAACGGauccuCGCccucgaUCGUCGCgaGCAUCg -3'
miRNA:   3'- -CCAGCUUGUCg----GUG------AGCAGCG--CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 48312 0.69 0.599808
Target:  5'- aGUCGAGCAGUgCAgugugaUCGUCGCGCccccuUCg -3'
miRNA:   3'- cCAGCUUGUCG-GUg-----AGCAGCGCGu----AG- -5'
16366 5' -54.4 NC_004084.1 + 19643 0.69 0.632704
Target:  5'- --aCGAGC-GCCcgaaGgUCGUCGUGCGUCa -3'
miRNA:   3'- ccaGCUUGuCGG----UgAGCAGCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 22512 0.69 0.599808
Target:  5'- cGUCGAcGCGGCCACUCcagCGgGaCGUCc -3'
miRNA:   3'- cCAGCU-UGUCGGUGAGca-GCgC-GUAG- -5'
16366 5' -54.4 NC_004084.1 + 50975 0.7 0.567158
Target:  5'- cGUCGGACuccgaggucucGCCAC-CGUCG-GCAUCg -3'
miRNA:   3'- cCAGCUUGu----------CGGUGaGCAGCgCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 49434 0.7 0.52439
Target:  5'- cGUCGAACucguagcuGCC-CUCGUCGcCGcCGUCu -3'
miRNA:   3'- cCAGCUUGu-------CGGuGAGCAGC-GC-GUAG- -5'
16366 5' -54.4 NC_004084.1 + 16628 0.7 0.556368
Target:  5'- aGGUCGAucgugAC-GCC-CUCGUCGuCGaCGUCg -3'
miRNA:   3'- -CCAGCU-----UGuCGGuGAGCAGC-GC-GUAG- -5'
16366 5' -54.4 NC_004084.1 + 57611 0.7 0.52439
Target:  5'- gGGUUGAGgAGUucgCGCUUcgucucgagGUCGCGCGUCg -3'
miRNA:   3'- -CCAGCUUgUCG---GUGAG---------CAGCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 5154 0.71 0.503463
Target:  5'- cGUCGccCGGCCcgauCUCGUCGC-CGUCg -3'
miRNA:   3'- cCAGCuuGUCGGu---GAGCAGCGcGUAG- -5'
16366 5' -54.4 NC_004084.1 + 35335 0.72 0.443072
Target:  5'- aGGUCGccGACGuCCAcCUCGUCGCGUcgCc -3'
miRNA:   3'- -CCAGC--UUGUcGGU-GAGCAGCGCGuaG- -5'
16366 5' -54.4 NC_004084.1 + 25827 0.73 0.369351
Target:  5'- cGGUCGcgUAGCCACUCGcC-CGCuUCg -3'
miRNA:   3'- -CCAGCuuGUCGGUGAGCaGcGCGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.