Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16366 | 5' | -54.4 | NC_004084.1 | + | 1060 | 1.12 | 0.000901 |
Target: 5'- aGGUCGAACAGCCACUCGUCGCGCAUCu -3' miRNA: 3'- -CCAGCUUGUCGGUGAGCAGCGCGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 29396 | 0.85 | 0.069903 |
Target: 5'- cGGUCGGGCGGCCACUCcUgGgGCGUCg -3' miRNA: 3'- -CCAGCUUGUCGGUGAGcAgCgCGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 4348 | 0.75 | 0.289692 |
Target: 5'- gGGUCGGcucGCCcgucucCUCGUCGCGCGUCc -3' miRNA: 3'- -CCAGCUuguCGGu-----GAGCAGCGCGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 3072 | 0.75 | 0.297015 |
Target: 5'- cGUCGAcgGGCCGCUCGUCGacguGCGUUc -3' miRNA: 3'- cCAGCUugUCGGUGAGCAGCg---CGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 33785 | 0.75 | 0.297015 |
Target: 5'- cGGUCGcgUAGCCACUCGcccgguUCGUGCcggaGUCa -3' miRNA: 3'- -CCAGCuuGUCGGUGAGC------AGCGCG----UAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 5621 | 0.75 | 0.322981 |
Target: 5'- cGGUCGGaaccuccugaaGCAGCCGCUCcugguucucgucgaaGUC-CGCAUCg -3' miRNA: 3'- -CCAGCU-----------UGUCGGUGAG---------------CAGcGCGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 27696 | 0.74 | 0.32456 |
Target: 5'- cGGUCGAACAGCCcaucgaucagcucCUCGaCGCGC-UCc -3' miRNA: 3'- -CCAGCUUGUCGGu------------GAGCaGCGCGuAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 21256 | 0.74 | 0.343955 |
Target: 5'- uGUCGAAC-GCCccgaGCUCGUCGCGaugAUCa -3' miRNA: 3'- cCAGCUUGuCGG----UGAGCAGCGCg--UAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 47361 | 0.74 | 0.352279 |
Target: 5'- cGUCG-GCGGCCGCcccuUCGUC-CGCGUCg -3' miRNA: 3'- cCAGCuUGUCGGUG----AGCAGcGCGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 25827 | 0.73 | 0.369351 |
Target: 5'- cGGUCGcgUAGCCACUCGcC-CGCuUCg -3' miRNA: 3'- -CCAGCuuGUCGGUGAGCaGcGCGuAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 35335 | 0.72 | 0.443072 |
Target: 5'- aGGUCGccGACGuCCAcCUCGUCGCGUcgCc -3' miRNA: 3'- -CCAGC--UUGUcGGU-GAGCAGCGCGuaG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 5154 | 0.71 | 0.503463 |
Target: 5'- cGUCGccCGGCCcgauCUCGUCGC-CGUCg -3' miRNA: 3'- cCAGCuuGUCGGu---GAGCAGCGcGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 57611 | 0.7 | 0.52439 |
Target: 5'- gGGUUGAGgAGUucgCGCUUcgucucgagGUCGCGCGUCg -3' miRNA: 3'- -CCAGCUUgUCG---GUGAG---------CAGCGCGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 49434 | 0.7 | 0.52439 |
Target: 5'- cGUCGAACucguagcuGCC-CUCGUCGcCGcCGUCu -3' miRNA: 3'- cCAGCUUGu-------CGGuGAGCAGC-GC-GUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 16628 | 0.7 | 0.556368 |
Target: 5'- aGGUCGAucgugAC-GCC-CUCGUCGuCGaCGUCg -3' miRNA: 3'- -CCAGCU-----UGuCGGuGAGCAGC-GC-GUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 50975 | 0.7 | 0.567158 |
Target: 5'- cGUCGGACuccgaggucucGCCAC-CGUCG-GCAUCg -3' miRNA: 3'- cCAGCUUGu----------CGGUGaGCAGCgCGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 22512 | 0.69 | 0.599808 |
Target: 5'- cGUCGAcGCGGCCACUCcagCGgGaCGUCc -3' miRNA: 3'- cCAGCU-UGUCGGUGAGca-GCgC-GUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 2330 | 0.69 | 0.599808 |
Target: 5'- uGUUGAGCuccuGCCGCcagagUCGUCGUuccGCGUCg -3' miRNA: 3'- cCAGCUUGu---CGGUG-----AGCAGCG---CGUAG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 48312 | 0.69 | 0.599808 |
Target: 5'- aGUCGAGCAGUgCAgugugaUCGUCGCGCccccuUCg -3' miRNA: 3'- cCAGCUUGUCG-GUg-----AGCAGCGCGu----AG- -5' |
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16366 | 5' | -54.4 | NC_004084.1 | + | 35443 | 0.69 | 0.610758 |
Target: 5'- aGGUCGAccaggacuCGGUCGgcCUCGUCGCGaguGUCg -3' miRNA: 3'- -CCAGCUu-------GUCGGU--GAGCAGCGCg--UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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