miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16366 5' -54.4 NC_004084.1 + 1060 1.12 0.000901
Target:  5'- aGGUCGAACAGCCACUCGUCGCGCAUCu -3'
miRNA:   3'- -CCAGCUUGUCGGUGAGCAGCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 2173 0.68 0.676507
Target:  5'- cGUCGAuGCAGUCGCUCGa-GCGCc-- -3'
miRNA:   3'- cCAGCU-UGUCGGUGAGCagCGCGuag -5'
16366 5' -54.4 NC_004084.1 + 2330 0.69 0.599808
Target:  5'- uGUUGAGCuccuGCCGCcagagUCGUCGUuccGCGUCg -3'
miRNA:   3'- cCAGCUUGu---CGGUG-----AGCAGCG---CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 3072 0.75 0.297015
Target:  5'- cGUCGAcgGGCCGCUCGUCGacguGCGUUc -3'
miRNA:   3'- cCAGCUugUCGGUGAGCAGCg---CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 4348 0.75 0.289692
Target:  5'- gGGUCGGcucGCCcgucucCUCGUCGCGCGUCc -3'
miRNA:   3'- -CCAGCUuguCGGu-----GAGCAGCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 4960 0.66 0.801027
Target:  5'- -aUCGAGCAGUgGCUCcagaGCGCcUCg -3'
miRNA:   3'- ccAGCUUGUCGgUGAGcag-CGCGuAG- -5'
16366 5' -54.4 NC_004084.1 + 5154 0.71 0.503463
Target:  5'- cGUCGccCGGCCcgauCUCGUCGC-CGUCg -3'
miRNA:   3'- cCAGCuuGUCGGu---GAGCAGCGcGUAG- -5'
16366 5' -54.4 NC_004084.1 + 5621 0.75 0.322981
Target:  5'- cGGUCGGaaccuccugaaGCAGCCGCUCcugguucucgucgaaGUC-CGCAUCg -3'
miRNA:   3'- -CCAGCU-----------UGUCGGUGAG---------------CAGcGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 10946 0.68 0.676507
Target:  5'- -cUCGAACAGCCAgUCccgGUCGa-CAUCg -3'
miRNA:   3'- ccAGCUUGUCGGUgAG---CAGCgcGUAG- -5'
16366 5' -54.4 NC_004084.1 + 11471 0.68 0.691715
Target:  5'- -uUCGaAGCAGCCGCUCGggcacgacagaucgaUCGUuucagGCAUCu -3'
miRNA:   3'- ccAGC-UUGUCGGUGAGC---------------AGCG-----CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 12176 0.68 0.684123
Target:  5'- aGGUCGcaggguacguccccAGCGGCgACcugaugaugaUCGUCGaCGCAUCc -3'
miRNA:   3'- -CCAGC--------------UUGUCGgUG----------AGCAGC-GCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 13973 0.68 0.665592
Target:  5'- cGGUCGAugcacugaacGCGGCCguGCUCGUC-CGU-UCg -3'
miRNA:   3'- -CCAGCU----------UGUCGG--UGAGCAGcGCGuAG- -5'
16366 5' -54.4 NC_004084.1 + 15002 0.68 0.6982
Target:  5'- aGUUGAcgaagaugcGCuGCgGCUCGUCGaGCGUCg -3'
miRNA:   3'- cCAGCU---------UGuCGgUGAGCAGCgCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 15627 0.67 0.751118
Target:  5'- gGGUUGAACuuCCACUCGUCacCGUgAUCc -3'
miRNA:   3'- -CCAGCUUGucGGUGAGCAGc-GCG-UAG- -5'
16366 5' -54.4 NC_004084.1 + 16393 0.66 0.777536
Target:  5'- uGUCGAccgccucgcucgcgACGGCCACUCGagcaaagacggcgUCGauguggGCAUCg -3'
miRNA:   3'- cCAGCU--------------UGUCGGUGAGC-------------AGCg-----CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 16628 0.7 0.556368
Target:  5'- aGGUCGAucgugAC-GCC-CUCGUCGuCGaCGUCg -3'
miRNA:   3'- -CCAGCU-----UGuCGGuGAGCAGC-GC-GUAG- -5'
16366 5' -54.4 NC_004084.1 + 17689 0.68 0.64368
Target:  5'- uGGUCGAGCuucgagacGCUACUgagcCGuUCGCgGCAUCa -3'
miRNA:   3'- -CCAGCUUGu-------CGGUGA----GC-AGCG-CGUAG- -5'
16366 5' -54.4 NC_004084.1 + 18737 0.68 0.665592
Target:  5'- cGGUCGAGCcguugcccuGCCAgUCGggguuggagCGCGCGa- -3'
miRNA:   3'- -CCAGCUUGu--------CGGUgAGCa--------GCGCGUag -5'
16366 5' -54.4 NC_004084.1 + 19643 0.69 0.632704
Target:  5'- --aCGAGC-GCCcgaaGgUCGUCGUGCGUCa -3'
miRNA:   3'- ccaGCUUGuCGG----UgAGCAGCGCGUAG- -5'
16366 5' -54.4 NC_004084.1 + 21256 0.74 0.343955
Target:  5'- uGUCGAAC-GCCccgaGCUCGUCGCGaugAUCa -3'
miRNA:   3'- cCAGCUUGuCGG----UGAGCAGCGCg--UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.