Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16367 | 3' | -50.3 | NC_004084.1 | + | 49736 | 0.66 | 0.959679 |
Target: 5'- -cGAGUCCucgGUCCACug--CGUCGUCa -3' miRNA: 3'- gcUUCAGG---CAGGUGcuaaGUAGCAGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 20356 | 0.66 | 0.959679 |
Target: 5'- aCGAGGUUCGUaacCCuuGAUUCGcgCGUUGu -3' miRNA: 3'- -GCUUCAGGCA---GGugCUAAGUa-GCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 35392 | 0.66 | 0.963469 |
Target: 5'- uCGAAGcUCCaGaUCACGAccgacgggUCAUCGUCGu -3' miRNA: 3'- -GCUUC-AGG-CaGGUGCUa-------AGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 11238 | 0.66 | 0.967002 |
Target: 5'- aGAAG-CCGUCC-CGGUcagCAUCccaGUCGc -3' miRNA: 3'- gCUUCaGGCAGGuGCUAa--GUAG---CAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 53867 | 0.66 | 0.967002 |
Target: 5'- cCGGAGUUCGUUUACGGUgagcaggccugCAUCGcCu -3' miRNA: 3'- -GCUUCAGGCAGGUGCUAa----------GUAGCaGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 35332 | 0.66 | 0.967002 |
Target: 5'- cCGAGGUCgccgaCGUCCACcucgUCG-CGUCGc -3' miRNA: 3'- -GCUUCAG-----GCAGGUGcua-AGUaGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 13475 | 0.66 | 0.967002 |
Target: 5'- aCGccGUucUCGUCgACGAacgUCAUCGUCa -3' miRNA: 3'- -GCuuCA--GGCAGgUGCUa--AGUAGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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