miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16367 3' -50.3 NC_004084.1 + 49736 0.66 0.959679
Target:  5'- -cGAGUCCucgGUCCACug--CGUCGUCa -3'
miRNA:   3'- gcUUCAGG---CAGGUGcuaaGUAGCAGc -5'
16367 3' -50.3 NC_004084.1 + 20356 0.66 0.959679
Target:  5'- aCGAGGUUCGUaacCCuuGAUUCGcgCGUUGu -3'
miRNA:   3'- -GCUUCAGGCA---GGugCUAAGUa-GCAGC- -5'
16367 3' -50.3 NC_004084.1 + 35392 0.66 0.963469
Target:  5'- uCGAAGcUCCaGaUCACGAccgacgggUCAUCGUCGu -3'
miRNA:   3'- -GCUUC-AGG-CaGGUGCUa-------AGUAGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 11238 0.66 0.967002
Target:  5'- aGAAG-CCGUCC-CGGUcagCAUCccaGUCGc -3'
miRNA:   3'- gCUUCaGGCAGGuGCUAa--GUAG---CAGC- -5'
16367 3' -50.3 NC_004084.1 + 53867 0.66 0.967002
Target:  5'- cCGGAGUUCGUUUACGGUgagcaggccugCAUCGcCu -3'
miRNA:   3'- -GCUUCAGGCAGGUGCUAa----------GUAGCaGc -5'
16367 3' -50.3 NC_004084.1 + 35332 0.66 0.967002
Target:  5'- cCGAGGUCgccgaCGUCCACcucgUCG-CGUCGc -3'
miRNA:   3'- -GCUUCAG-----GCAGGUGcua-AGUaGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 13475 0.66 0.967002
Target:  5'- aCGccGUucUCGUCgACGAacgUCAUCGUCa -3'
miRNA:   3'- -GCuuCA--GGCAGgUGCUa--AGUAGCAGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.