miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16367 3' -50.3 NC_004084.1 + 41064 0.67 0.919558
Target:  5'- aGAAG-CgGUCCGCGAguaCGUCGaCGa -3'
miRNA:   3'- gCUUCaGgCAGGUGCUaa-GUAGCaGC- -5'
16367 3' -50.3 NC_004084.1 + 46541 0.72 0.715241
Target:  5'- uCGAAGUCuucgaCGUCCG-GA-UCGUCGUCGg -3'
miRNA:   3'- -GCUUCAG-----GCAGGUgCUaAGUAGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 49736 0.66 0.959679
Target:  5'- -cGAGUCCucgGUCCACug--CGUCGUCa -3'
miRNA:   3'- gcUUCAGG---CAGGUGcuaaGUAGCAGc -5'
16367 3' -50.3 NC_004084.1 + 50984 0.69 0.869831
Target:  5'- cCGAGGUCuCG-CCACcGUcggcaucgcccUCGUCGUCGa -3'
miRNA:   3'- -GCUUCAG-GCaGGUGcUA-----------AGUAGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 53867 0.66 0.967002
Target:  5'- cCGGAGUUCGUUUACGGUgagcaggccugCAUCGcCu -3'
miRNA:   3'- -GCUUCAGGCAGGUGCUAa----------GUAGCaGc -5'
16367 3' -50.3 NC_004084.1 + 56583 0.68 0.89277
Target:  5'- aCGAAGaguucaCCGUCCGCaacugCAUCGUCu -3'
miRNA:   3'- -GCUUCa-----GGCAGGUGcuaa-GUAGCAGc -5'
16367 3' -50.3 NC_004084.1 + 58119 0.69 0.877739
Target:  5'- uCGGGuUCuCGUCgGCGGU-CGUCGUCGa -3'
miRNA:   3'- -GCUUcAG-GCAGgUGCUAaGUAGCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.