miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16367 3' -50.3 NC_004084.1 + 13475 0.66 0.967002
Target:  5'- aCGccGUucUCGUCgACGAacgUCAUCGUCa -3'
miRNA:   3'- -GCuuCA--GGCAGgUGCUa--AGUAGCAGc -5'
16367 3' -50.3 NC_004084.1 + 11238 0.66 0.967002
Target:  5'- aGAAG-CCGUCC-CGGUcagCAUCccaGUCGc -3'
miRNA:   3'- gCUUCaGGCAGGuGCUAa--GUAG---CAGC- -5'
16367 3' -50.3 NC_004084.1 + 10008 0.67 0.941846
Target:  5'- aCGAAGaucUCCGagauggcggCCACGAUgCcgCGUCGa -3'
miRNA:   3'- -GCUUC---AGGCa--------GGUGCUAaGuaGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 5659 0.66 0.951308
Target:  5'- uCGAAGUCCGcaucguagUCCcaGCGGag-GUCGUCGa -3'
miRNA:   3'- -GCUUCAGGC--------AGG--UGCUaagUAGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 2501 0.67 0.936698
Target:  5'- uGAAGUCCaGucggcccacuccUCCgGCGGaUCGUCGUCGc -3'
miRNA:   3'- gCUUCAGG-C------------AGG-UGCUaAGUAGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 768 1.1 0.004103
Target:  5'- aCGAAGUCCGUCCACGAUUCAUCGUCGc -3'
miRNA:   3'- -GCUUCAGGCAGGUGCUAAGUAGCAGC- -5'
16367 3' -50.3 NC_004084.1 + 562 0.73 0.671378
Target:  5'- uCGAGGUgaCGUUCGCGAU--GUCGUCGa -3'
miRNA:   3'- -GCUUCAg-GCAGGUGCUAagUAGCAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.