Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16367 | 3' | -50.3 | NC_004084.1 | + | 50984 | 0.69 | 0.869831 |
Target: 5'- cCGAGGUCuCG-CCACcGUcggcaucgcccUCGUCGUCGa -3' miRNA: 3'- -GCUUCAG-GCaGGUGcUA-----------AGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 35392 | 0.66 | 0.963469 |
Target: 5'- uCGAAGcUCCaGaUCACGAccgacgggUCAUCGUCGu -3' miRNA: 3'- -GCUUC-AGG-CaGGUGCUa-------AGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 20356 | 0.66 | 0.959679 |
Target: 5'- aCGAGGUUCGUaacCCuuGAUUCGcgCGUUGu -3' miRNA: 3'- -GCUUCAGGCA---GGugCUAAGUa-GCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 5659 | 0.66 | 0.951308 |
Target: 5'- uCGAAGUCCGcaucguagUCCcaGCGGag-GUCGUCGa -3' miRNA: 3'- -GCUUCAGGC--------AGG--UGCUaagUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 17486 | 0.66 | 0.946715 |
Target: 5'- gCGAcGUCCGUCCAgccCGGUagcugcUCcUCGUCc -3' miRNA: 3'- -GCUuCAGGCAGGU---GCUA------AGuAGCAGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 17448 | 0.66 | 0.946715 |
Target: 5'- -cGGGUUCGUCCGgGA-UCGUCGaCGg -3' miRNA: 3'- gcUUCAGGCAGGUgCUaAGUAGCaGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 21818 | 0.66 | 0.946715 |
Target: 5'- ----cUCCGUCCGCGGUUCAcagagaacUCGcCa -3' miRNA: 3'- gcuucAGGCAGGUGCUAAGU--------AGCaGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 18682 | 0.67 | 0.929583 |
Target: 5'- uCGGAGUCCuccucgucauccucGUCgACGg--CGUCGUCGc -3' miRNA: 3'- -GCUUCAGG--------------CAGgUGCuaaGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 39394 | 0.68 | 0.885387 |
Target: 5'- uCGAAGUCCaGUUCGagcuCGGcgUCGUCGUCc -3' miRNA: 3'- -GCUUCAGG-CAGGU----GCUa-AGUAGCAGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 11238 | 0.66 | 0.967002 |
Target: 5'- aGAAG-CCGUCC-CGGUcagCAUCccaGUCGc -3' miRNA: 3'- gCUUCaGGCAGGuGCUAa--GUAG---CAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 13475 | 0.66 | 0.967002 |
Target: 5'- aCGccGUucUCGUCgACGAacgUCAUCGUCa -3' miRNA: 3'- -GCuuCA--GGCAGgUGCUa--AGUAGCAGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 53867 | 0.66 | 0.967002 |
Target: 5'- cCGGAGUUCGUUUACGGUgagcaggccugCAUCGcCu -3' miRNA: 3'- -GCUUCAGGCAGGUGCUAa----------GUAGCaGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 15087 | 0.72 | 0.726026 |
Target: 5'- -cGAGaCCGUCCAC---UCGUCGUCGg -3' miRNA: 3'- gcUUCaGGCAGGUGcuaAGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 46541 | 0.72 | 0.715241 |
Target: 5'- uCGAAGUCuucgaCGUCCG-GA-UCGUCGUCGg -3' miRNA: 3'- -GCUUCAG-----GCAGGUgCUaAGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 768 | 1.1 | 0.004103 |
Target: 5'- aCGAAGUCCGUCCACGAUUCAUCGUCGc -3' miRNA: 3'- -GCUUCAGGCAGGUGCUAAGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 562 | 0.73 | 0.671378 |
Target: 5'- uCGAGGUgaCGUUCGCGAU--GUCGUCGa -3' miRNA: 3'- -GCUUCAg-GCAGGUGCUAagUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 36416 | 0.77 | 0.445273 |
Target: 5'- uCGAuGUUCGUCCGCGcgUCGUCGaCGu -3' miRNA: 3'- -GCUuCAGGCAGGUGCuaAGUAGCaGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 58119 | 0.69 | 0.877739 |
Target: 5'- uCGGGuUCuCGUCgGCGGU-CGUCGUCGa -3' miRNA: 3'- -GCUUcAG-GCAGgUGCUAaGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 2501 | 0.67 | 0.936698 |
Target: 5'- uGAAGUCCaGucggcccacuccUCCgGCGGaUCGUCGUCGc -3' miRNA: 3'- gCUUCAGG-C------------AGG-UGCUaAGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 10008 | 0.67 | 0.941846 |
Target: 5'- aCGAAGaucUCCGagauggcggCCACGAUgCcgCGUCGa -3' miRNA: 3'- -GCUUC---AGGCa--------GGUGCUAaGuaGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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