Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16367 | 3' | -50.3 | NC_004084.1 | + | 22734 | 0.68 | 0.90672 |
Target: 5'- aCGAAGUCCGcCCAgCGGUacgaggaCAUCGaCGa -3' miRNA: 3'- -GCUUCAGGCaGGU-GCUAa------GUAGCaGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 41064 | 0.67 | 0.919558 |
Target: 5'- aGAAG-CgGUCCGCGAguaCGUCGaCGa -3' miRNA: 3'- gCUUCaGgCAGGUGCUaa-GUAGCaGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 2501 | 0.67 | 0.936698 |
Target: 5'- uGAAGUCCaGucggcccacuccUCCgGCGGaUCGUCGUCGc -3' miRNA: 3'- gCUUCAGG-C------------AGG-UGCUaAGUAGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 10008 | 0.67 | 0.941846 |
Target: 5'- aCGAAGaucUCCGagauggcggCCACGAUgCcgCGUCGa -3' miRNA: 3'- -GCUUC---AGGCa--------GGUGCUAaGuaGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 49736 | 0.66 | 0.959679 |
Target: 5'- -cGAGUCCucgGUCCACug--CGUCGUCa -3' miRNA: 3'- gcUUCAGG---CAGGUGcuaaGUAGCAGc -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 35332 | 0.66 | 0.967002 |
Target: 5'- cCGAGGUCgccgaCGUCCACcucgUCG-CGUCGc -3' miRNA: 3'- -GCUUCAG-----GCAGGUGcua-AGUaGCAGC- -5' |
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16367 | 3' | -50.3 | NC_004084.1 | + | 36676 | 0.69 | 0.860841 |
Target: 5'- gGAA--CCGUCCAgGGUUCGuggguccUCGUCGg -3' miRNA: 3'- gCUUcaGGCAGGUgCUAAGU-------AGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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