miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16368 3' -51.8 NC_004084.1 + 8247 0.66 0.924184
Target:  5'- uCGAGACGAucgacGcCGCuGACgacaUCCUCGACa -3'
miRNA:   3'- -GCUCUGCUu----C-GCGcUUG----AGGAGUUGg -5'
16368 3' -51.8 NC_004084.1 + 11526 0.66 0.924184
Target:  5'- uCGuGAUGuuGaucuCGAACUCCUCGACg -3'
miRNA:   3'- -GCuCUGCuuCgc--GCUUGAGGAGUUGg -5'
16368 3' -51.8 NC_004084.1 + 10461 0.66 0.924184
Target:  5'- gCGAGGCGAuccaggacGGCcugaCGGACggCCUCGAgCg -3'
miRNA:   3'- -GCUCUGCU--------UCGc---GCUUGa-GGAGUUgG- -5'
16368 3' -51.8 NC_004084.1 + 22144 0.66 0.924184
Target:  5'- gCGAuGACuGAcCGCGAGCgCCUCGGCg -3'
miRNA:   3'- -GCU-CUGcUUcGCGCUUGaGGAGUUGg -5'
16368 3' -51.8 NC_004084.1 + 39916 0.66 0.924184
Target:  5'- gGAGACGGAGCcUGAACcaaUCAgaaACCa -3'
miRNA:   3'- gCUCUGCUUCGcGCUUGaggAGU---UGG- -5'
16368 3' -51.8 NC_004084.1 + 44045 0.66 0.918144
Target:  5'- cCGAGugGGAgguGCGCGAagaugccgcguaGCaCCUCGcaguACCu -3'
miRNA:   3'- -GCUCugCUU---CGCGCU------------UGaGGAGU----UGG- -5'
16368 3' -51.8 NC_004084.1 + 30522 0.66 0.918144
Target:  5'- gCGAGcuGCGcGAGCGCGAAUgacgcuguUCgUCGACa -3'
miRNA:   3'- -GCUC--UGC-UUCGCGCUUG--------AGgAGUUGg -5'
16368 3' -51.8 NC_004084.1 + 4133 0.66 0.918144
Target:  5'- uCGAGACcgaGAAGauCGUccagaacgaGGACUaCCUCAACCu -3'
miRNA:   3'- -GCUCUG---CUUC--GCG---------CUUGA-GGAGUUGG- -5'
16368 3' -51.8 NC_004084.1 + 26623 0.66 0.918144
Target:  5'- cCGAGACGGccauGGaCGCGGuaagugCCUCcACCc -3'
miRNA:   3'- -GCUCUGCU----UC-GCGCUuga---GGAGuUGG- -5'
16368 3' -51.8 NC_004084.1 + 27466 0.66 0.918144
Target:  5'- gGAGACGGucGGCGUccucGAGCUCgacgUCGACg -3'
miRNA:   3'- gCUCUGCU--UCGCG----CUUGAGg---AGUUGg -5'
16368 3' -51.8 NC_004084.1 + 21872 0.66 0.917525
Target:  5'- uGAGGugcauCGGcuCGCGAucguacgGCUCCUCGAUCu -3'
miRNA:   3'- gCUCU-----GCUucGCGCU-------UGAGGAGUUGG- -5'
16368 3' -51.8 NC_004084.1 + 24084 0.66 0.911824
Target:  5'- ---cGCGAAGUGC--GCUCUUCGACUc -3'
miRNA:   3'- gcucUGCUUCGCGcuUGAGGAGUUGG- -5'
16368 3' -51.8 NC_004084.1 + 7909 0.66 0.911824
Target:  5'- cCGAGACagucggcgcgaaGAAGaCGCGGAUcccgacCCUCAACa -3'
miRNA:   3'- -GCUCUG------------CUUC-GCGCUUGa-----GGAGUUGg -5'
16368 3' -51.8 NC_004084.1 + 3967 0.66 0.911824
Target:  5'- cCGcGGCGAcagugcGGCGCaGGACUCaacaUCGACUu -3'
miRNA:   3'- -GCuCUGCU------UCGCG-CUUGAGg---AGUUGG- -5'
16368 3' -51.8 NC_004084.1 + 16873 0.66 0.911824
Target:  5'- uGGGAUcucGAGCGCGGcgucuGCUCCgaUCGACg -3'
miRNA:   3'- gCUCUGc--UUCGCGCU-----UGAGG--AGUUGg -5'
16368 3' -51.8 NC_004084.1 + 10387 0.66 0.911824
Target:  5'- aGcAGGCGAucgAGCGCGAagaACUCCgCGAg- -3'
miRNA:   3'- gC-UCUGCU---UCGCGCU---UGAGGaGUUgg -5'
16368 3' -51.8 NC_004084.1 + 705 0.66 0.905226
Target:  5'- gCGAGAUGAGuaGCGAGCagUUCGuCCc -3'
miRNA:   3'- -GCUCUGCUUcgCGCUUGagGAGUuGG- -5'
16368 3' -51.8 NC_004084.1 + 28305 0.66 0.905226
Target:  5'- uCGGGGCGgcGaguaGUGAGCaCCUCGagcucGCCg -3'
miRNA:   3'- -GCUCUGCuuCg---CGCUUGaGGAGU-----UGG- -5'
16368 3' -51.8 NC_004084.1 + 19725 0.66 0.905226
Target:  5'- --cGACGGugguGGCGaGGACUCCUCGucGCUc -3'
miRNA:   3'- gcuCUGCU----UCGCgCUUGAGGAGU--UGG- -5'
16368 3' -51.8 NC_004084.1 + 51523 0.66 0.905226
Target:  5'- uCGAGACGGu-CGCGAucccgACguaCCUCGGCa -3'
miRNA:   3'- -GCUCUGCUucGCGCU-----UGa--GGAGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.