Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 20293 | 0.67 | 0.706535 |
Target: 5'- -aCGUCGACGuGCUUGcgCCgGAAUGUu -3' miRNA: 3'- aaGCGGUUGC-CGAGCuaGGaCUUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 52546 | 0.67 | 0.706535 |
Target: 5'- cUUCGCCu-CGGCcaUCGA--CUGAGCGUu -3' miRNA: 3'- -AAGCGGuuGCCG--AGCUagGACUUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 115 | 0.67 | 0.706535 |
Target: 5'- aUCgGCCGACGGCg-GGUCUgc-ACGCa -3' miRNA: 3'- aAG-CGGUUGCCGagCUAGGacuUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 16919 | 0.67 | 0.706535 |
Target: 5'- gUCGCCAGCGGCauccgcgaUCGucuUCCguucuCGCc -3' miRNA: 3'- aAGCGGUUGCCG--------AGCu--AGGacuu-GCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 15557 | 0.67 | 0.706535 |
Target: 5'- -aCGUCGACGGgUCGGUCgau-GCGCu -3' miRNA: 3'- aaGCGGUUGCCgAGCUAGgacuUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 46285 | 0.67 | 0.714103 |
Target: 5'- aUCGCCGAUGGCggucaagaaccccgUCaggauGAUCgaGAGCGUg -3' miRNA: 3'- aAGCGGUUGCCG--------------AG-----CUAGgaCUUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 21485 | 0.67 | 0.717334 |
Target: 5'- -cCGaCCGACGGCgauAUCUgGAACGCg -3' miRNA: 3'- aaGC-GGUUGCCGagcUAGGaCUUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 47291 | 0.67 | 0.717334 |
Target: 5'- -aCGuCCAGCGGCUCugggacAUCCUucGAGcCGCg -3' miRNA: 3'- aaGC-GGUUGCCGAGc-----UAGGA--CUU-GCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 57082 | 0.67 | 0.728047 |
Target: 5'- gUCGCCAuucuCGGCgUCGccGUCCUcGGcCGCc -3' miRNA: 3'- aAGCGGUu---GCCG-AGC--UAGGA-CUuGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 49210 | 0.67 | 0.728047 |
Target: 5'- gUCGCCuggucCGGCUCcuucaGAUCgUG-ACGCu -3' miRNA: 3'- aAGCGGuu---GCCGAG-----CUAGgACuUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 1832 | 0.66 | 0.738664 |
Target: 5'- -aCGCCGcguucACGGUgUGGcUCCUGcAGCGCg -3' miRNA: 3'- aaGCGGU-----UGCCGaGCU-AGGAC-UUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 7981 | 0.66 | 0.738664 |
Target: 5'- -gCGCCGACuGuCUCGGUUCgGAuCGCg -3' miRNA: 3'- aaGCGGUUGcC-GAGCUAGGaCUuGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 772 | 0.66 | 0.738664 |
Target: 5'- --gGCCGAuCGGCUCG-UCgaGGcgACGCg -3' miRNA: 3'- aagCGGUU-GCCGAGCuAGgaCU--UGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 5482 | 0.66 | 0.748126 |
Target: 5'- -aCGCCGACGGCcagaucgucgcagUCGAcgagucguUCCUagugGGugGCg -3' miRNA: 3'- aaGCGGUUGCCG-------------AGCU--------AGGA----CUugCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 51719 | 0.66 | 0.749171 |
Target: 5'- aUCGCCGGCGuugacCUCGAga-UGGACGUc -3' miRNA: 3'- aAGCGGUUGCc----GAGCUaggACUUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 52042 | 0.66 | 0.759559 |
Target: 5'- gUCGCCGugGaGCggGAugUCCUGGAccuCGCc -3' miRNA: 3'- aAGCGGUugC-CGagCU--AGGACUU---GCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 44035 | 0.66 | 0.759559 |
Target: 5'- cUCGCCcucccaGGC-CGccUCCUGAGCGUc -3' miRNA: 3'- aAGCGGuug---CCGaGCu-AGGACUUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 22039 | 0.66 | 0.759559 |
Target: 5'- gUCGaucuCGGCGGagacgUCG-UCCUGGACGCc -3' miRNA: 3'- aAGCg---GUUGCCg----AGCuAGGACUUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 54126 | 0.66 | 0.759559 |
Target: 5'- gUCGCCGuCGGCUUccagcaCCUG-ACGCc -3' miRNA: 3'- aAGCGGUuGCCGAGcua---GGACuUGCG- -5' |
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16369 | 3' | -54.4 | NC_004084.1 | + | 57327 | 0.66 | 0.759559 |
Target: 5'- -aCGCCuacaaAGCGGCgaaGGUCgUGAagauGCGCg -3' miRNA: 3'- aaGCGG-----UUGCCGag-CUAGgACU----UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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